10.1590/1414-431X2021e11372

Profiles of immune infiltration in abdominal aortic aneurysm and their associated marker genes: a gene expression-based study
Cited by: 5
Author(s): Tan Li, Tianlong Wang, Xin Zhao
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-021-01928-6

Construction of a prognostic model with histone modification-related genes and identification of potential drugs in pancreatic cancer
Cited by: 8
Author(s): Chen Yuan, Ruiyuan Xu, Rexiati Ruze, Jinshou Yang, Huanyu Wang, Jianlu Song, Lei You, Yuming Wang, Yupei Zhao
Software Mentions: 4
Published: about 5 years ago

10.1186/s12935-021-02090-9

The functions and prognostic values of m6A RNA methylation regulators in thyroid carcinoma
Cited by: 8
Author(s): Zuwei Yu, Shao-Ting Feng, Di Zhang, Xuchen Cao, Yue Yu, Xin Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12935-020-01238-3

Identification of a m6A RNA methylation regulators-based signature for predicting the prognosis of clear cell renal carcinoma
Cited by: 34
Author(s): Jing Chen, Kun Yu, Guansheng Zhong, Wei Shen
Software Mentions: 4
Published: about 6 years ago

10.1186/s40644-019-0256-y

Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
Cited by: 19
Author(s): Zimin Sun, Yiming Li, Yinyan Wang, Xing Fan, Kaibin Xu, Kai Wang, Shaowu Li, Zhong Zhang, Tao Jiang, Xing Liu
Software Mentions: 4
Published: almost 7 years ago

10.1186/s40168-017-0362-7

Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome—from days to weeks
Cited by: 54
Author(s): Bruno Tilocca, Katharina Burbach, Charlotte M E Heyer, Ludwig E. Hoelzle, R. Mosenthin, Volker Stefanski, Amélia Camarinha‐Silva, Jana Seifert
Software Mentions: 4
Published: almost 9 years ago

10.3390/microorganisms9010157

The Effect of a High-Grain Diet on the Rumen Microbiome of Goats with a Special Focus on Anaerobic Fungi
Cited by: 13
Author(s): K. Fliegerová, Sabine Marie Podmirseg, Julia Vinzelj, Diego Grilli, Simona Kvasnová, Dagmar Schierová, Hana Sechovcová, Jakub Mrázek, Giuliana Siddi, Graciela Nora Arenas, Giuseppe Moniello
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9071503

Metagenomic Insight of a Full Scale Eco-Friendly Treatment System of Textile Dye Wastewater Using Bioaugmentation of the Composite Culture CES-1
Cited by: 6
Author(s): Aalfin-Emmanuel Santhanarajan, Woo Jun Sul, Keunje Yoo, Hoon Je Seong, Hong Gi Kim, Sung-Cheol Koh
Software Mentions: 4
Published: about 5 years ago

10.1016/j.molcel.2018.08.020

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures
Cited by: 206
Author(s): Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer, Jason S. Iacovoni, Maga Rowicka, Krzysztof Ginalski, Jacques Côté, Gaëlle Legube
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.3248

Spatial patterns of hypolithic cyanobacterial diversity in Northern Australia
Cited by: 5
Author(s): Keith A. Christian, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 4
Published: almost 9 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: over 7 years ago

10.1111/eva.12650

Human activities and landscape features interact to closely define the distribution and dispersal of an urban commensal
Cited by: 23
Author(s): Qian Tang, Grace Kah Mun Low, John Lim, Chyi Yin Gwee, Frank E. Rheindt
Software Mentions: 4
Published: about 8 years ago

10.3390/foods10071572

Characterization of Nutritional Quality Traits of a Common Bean Germplasm Collection
Cited by: 15
Author(s): Ester Murube, Romina Beleggia, Deborah Pacetti, Ancuta Nartea, Giulia Frascarelli, Giovanna Lanzavecchia, Elisa Bellucci, Laura Nanni, Tania Gioia, Ugo Marciello, Stefania Esposito, Giacomo Foresi, Giuseppina Logozzo, Giuseppe Natale Frega, Elena Bitocchi, Roberto Papa
Software Mentions: 4
Published: about 5 years ago

10.3389/fnbeh.2018.00272

Oxytocin Manipulation Alters Neural Activity in Response to Social Stimuli in Eusocial Naked Mole-Rats
Cited by: 4
Author(s): Mariela Faykoo-Martinez, Skyler J. Mooney, Melissa M. Holmes
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2020.562662

Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel
Cited by: 6
Author(s): Amy R. Dunn, Niran Hadad, Sarah M. Neuner, Jigang Zhang, Vivek Philip, Logan Dumitrescu, Timothy J. Hohman, Jeremy H. Herskowitz, Kathryn A O’Connell, Catherine C. Kaczorowski
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcimb.2020.00485

Gut Microbiota-Metabolome Changes in Children With Diarrhea by Diarrheagenic E. coli
Cited by: 16
Author(s): Pablo Gallardo, Mariana Izquierdo, Roberto Vidal, Francisco Soto, Juan C. Ossa, Mauricio J. Farfán
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2020.598743

A Pan-Cancer Study of Epidermal Growth Factor-Like Domains 6/7/8 as Therapeutic Targets in Cancer
Cited by: 3
Author(s): Shanping Shi, Ting Ma, Yang Xi
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00912

Identification and Validation of an Immunological Expression-Based Prognostic Signature in Breast Cancer
Cited by: 7
Author(s): Jianying Pei, Yan Li, Tianxiong Su, Qiaomei Zhang, Xiaohai He, Dan Tao, Yanyun Wang, Manqiu Yuan, Yanping Li
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2018.02318

Commensal Escherichia coli Strains Can Promote Intestinal Inflammation via Differential Interleukin-6 Production
Cited by: 53
Author(s): Hatem Kittana, João Carlos Gomes-Neto, Kari Heck, Abby L. Geis, Rafael R. Segura Muñoz, Liz A. Cody, Robert Schmaltz, Laure B. Bindels, Rohita Sinha, Jesse M. Hostetter, Andrew K. Benson, Amanda E. Ramer‐Tait
Software Mentions: 4
Published: almost 8 years ago

10.3389/fimmu.2021.701273

Immune Signature Linked to COVID-19 Severity: A SARS-Score for Personalized Medicine
Cited by: 5
Author(s): Jules Russick, Pierre-Emmanuel Foy, Nathalie Josseaume, Maxime Meylan, Nadine Benhamouda, Amos Kirilovsky, Carine El Sissy, Éric Tartour, David Smadja, Alexandre Karras, Jean‐Sébastien Hulot, Marine Livrozet, Antoine Fayol, Jean‐Benoît Arlet, Jean‐Luc Diehl, Marie-Agnès Dragon-Durey, Franck Pagès, Isabelle Cremer
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2017.00138

Feeding a High Concentration Diet Induces Unhealthy Alterations in the Composition and Metabolism of Ruminal Microbiota and Host Response in a Goat Model
Cited by: 71
Author(s): Chenlei Hua, Jing Tian, Ping Tian, Rihua Cong, Yanwen Luo, Geng Yang, Shiyu Tao, Yingdong Ni, Ruqian Zhao
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2018.01697

Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
Cited by: 11
Author(s): Jeremy R. Chen See, Nikea Ulrich, Hephzibah Nwanosike, Christopher J. McLimans, Vasily Tokarev, Justin Wright, Maria Fernanda Campa, Christopher J. Grant, Terry C. Hazen, Jonathan M. Niles, Daniel Ressler, Regina Lamendella
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2021.641141

Gut Structure and Microbial Communities in Sirex noctilio (Hymenoptera: Siricidae) and Their Predicted Contribution to Larval Nutrition
Cited by: 9
Author(s): Jiale Li, Chengcheng Li, Ming Wang, Lixiang Wang, Xiaobo Liu, Chenglong Gao, Lili Ren, Luo YouQing
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.643904

Predominant Microbial Colonizers in the Root Endosphere and Rhizosphere of Turfgrass Systems: Pseudomonas veronii, Janthinobacterium lividum, and Pseudogymnoascus spp.
Cited by: 10
Author(s): Qing Xia, Thomas W. Rufty, Wei Shi
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01540

Deciphering the Composition and Functional Profile of the Microbial Communities in Chinese Moutai Liquor Starters
Cited by: 76
Author(s): Shu Heng Gan, Fan Yang, Sunil Kumar Sahu, Ru Ye Luo, Shui Lin Liao, He Yu Wang, Tao Jin, Li Wang, Peng Fan Zhang, Xin Liu, Jin Xu, Jianlong Xu, Ya Yu Wang, Huan Liu
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2017.01943

An Investigation into Rumen Fungal and Protozoal Diversity in Three Rumen Fractions, during High-Fiber or Grain-Induced Sub-Acute Ruminal Acidosis Conditions, with or without Active Dry Yeast Supplementation
Cited by: 38
Author(s): Suzanne L. Ishaq, Ousama AlZahal, Nicola Walker, B.W. McBride
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2021.642730

The Composition of Root-Associated Bacteria and Fungi of Astragalus mongholicus and Their Relationship With the Bioactive Ingredients
Cited by: 9
Author(s): Yanmei Li, Yang Liu, Hui Zhang, Yan Yang, Gehong Wei, Zhe‐Fei Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.02494

Altered Gut Microbiota and Compositional Changes in Firmicutes and Proteobacteria in Mexican Undernourished and Obese Children
Cited by: 90
Author(s): Eder Orlando Méndez-Salazar, Marı́a Guadalupe Ortiz-López, Marı́a de los Ángeles Granados-Silvestre, Berenice Palacios‐González, Mészáros Márta
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmolb.2021.690151

Identification of Arp2/3 Complex Subunits as Prognostic Biomarkers for Hepatocellular Carcinoma
Cited by: 27
Author(s): Shenglan Huang, Dan Li, Lingling Zhuang, Li‐Ying Sun
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-66861-6

Estimation of homeostatic dysregulation and frailty using biomarker variability: a principal component analysis of hemodialysis patients
Cited by: 18
Author(s): Yuichi Nakazato, Tomoko Sugiyama, Rena Ohno, Hirofumi Shimoyama, Diana Leung, Alan A. Cohen, R Kurane, Satoru Hirose, Akira Watanabe, Hiromi Shimoyama
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-73948-7

Physical properties of epilithic river biofilm as a new lead to perform pollution bioassessments in overseas territories
Cited by: 3
Author(s): Dominique Monti, Cédric Hubas, Xavier Lourenço, Farid Begarin, Alexandre Haouisée, Laurence Romana, Estelle Lefrançois, Alexandra Jestin, Hélène Budzinski, Nathalie Tapie, Théo Risser, Jean-Louis Mansot, Philippe Keith, Olivier Gros, Pascal J. Lopez, Béatrice Lauga
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-95455-z

Evaluation of two highly effective lipid-lowering therapies in subjects with acute myocardial infarction
Cited by: 6
Author(s): Aline Klassen, Andréa Tedesco Faccio, Carolina R. C. Picossi, Priscilla Bento Matos Cruz Derogis, Carlos Eduardo dos Santos Ferreira, Aline Soriano Lopes, Alessandra Sussulini, Elisa Castañeda Santa Cruz, Rafaela Tudela Bastos, Stefanie Caroline Fontoura, Antônio Martins Figueiredo Neto, Marina Franco Maggi Tavares, Maria Cristina Izar, Francisco Antônio Helfenstein Fonseca
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.55851

Genetic mapping of etiologic brain cell types for obesity
Cited by: 62
Author(s): Pascal Timshel, Jonatan J Thompson, Tune H. Pers
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms21041337

Combined Analysis of the Metabolome and Transcriptome Identified Candidate Genes Involved in Phenolic Acid Biosynthesis in the Leaves of Cyclocarya paliurus
Cited by: 29
Author(s): Weida Lin, Yueling Li, Qiuwei Lu, Hongfei Lü, Junmin Li
Software Mentions: 4
Published: over 6 years ago

10.1155/2020/6657013

Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
Cited by: 2
Author(s): Guangzhen Wu, Yingkun Xu, Chenglin Han, Zilong Wang, Jiayi Li, Qifei Wang, Xiangyu Che
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/5550116

An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: over 5 years ago

10.1186/s12967-020-02698-x

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis
Cited by: 78
Author(s): Xingwang Zhao, Longlong Zhang, Juan Wang, Min Zhang, Zhiqiang Song, Bing Ni, Yi You
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/5579736

Glycine-Serine-Threonine Metabolic Axis Delays Intervertebral Disc Degeneration through Antioxidant Effects: An Imaging and Metabonomics Study
Cited by: 9
Author(s): Xiaolin Wu, Chang Liu, Shuai Yang, Nana Shen, Yan Wang, Yi Zhu, Zhaoyang Guo, Sihyung Yang, Dongming Xing, Houxi Li, Bohua Chen, Hongfei Xiang
Software Mentions: 4
Published: almost 5 years ago

10.3390/nu13020377

Feed Composition Differences Resulting from Organic and Conventional Farming Practices Affect Physiological Parameters in Wistar Rats—Results from a Factorial, Two-Generation Dietary Intervention Trial
Cited by: 9
Author(s): Marcin Barański, Dominika Średnicka-Tober, Leonidas Rempelos, Gultakin Hasanaliyeva, Joanna Gromadzka-Ostrowska, Krystyna Skwarło-Sońta, Tomasz Królikowski, Ewa Rembiałkowska, Jana Hajšlová, Věra Schulzová, İsmail Çakmak, Levent Öztürk, Ewelina Hallmann, Chris Seal, Per Ole Iversen, Vanessa Vigar, Carlo Leifert
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj-cs.564

Overview of current state of research on the application of artificial intelligence techniques for COVID-19
Cited by: 35
Author(s): Vijay Kumar, Dilbag Singh, Manjit Kaur, Robertas Damaševičius
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236619

Enacting national social distancing policies corresponds with dramatic reduction in COVID19 infection rates
Cited by: 101
Author(s): Daniel J. McGrail, Jianli Dai, Kathleen M. McAndrews, Raghu Kalluri
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.9322

Air transportation, population density and temperature predict the spread of COVID-19 in Brazil
Cited by: 82
Author(s): Pedro Aurélio Costa Lima Pequeno, Bruna Mendel, Clarissa Alves da Rosa, Mariane Bosholn, Jorge Luiz Pereira Souza, Fabrício Beggiato Baccaro, Reinaldo Imbrózio Barbosa, William E. Magnusson
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.103454

Weighted correlation gene network analysis reveals a new stemness index-related survival model for prognostic prediction in hepatocellular carcinoma
Cited by: 14
Author(s): Qiujing Zhang, Jia Wang, Menghan Liu, Qingqing Zhu, Qiang Li, Chao Xie, Congcong Han, Yali Wang, Min Gao, Jie Liu
Software Mentions: 4
Published: about 6 years ago

10.1186/s12936-019-2687-0

Impact of sunlight exposure on the residual efficacy of biolarvicides Bacillus thuringiensis israelensis and Bacillus sphaericus against the main malaria vector, Anopheles gambiae
Cited by: 13
Author(s): Barnabas Zogo, Bertin N’Cho Tchiekoi, Alphonsine A. Koffi, Amal Dahounto, Ludovic P. Ahoua Alou, Roch K. Dabiré, Lamine Baba-Moussa, Nicolas Moiroux, Cédric Pennetier
Software Mentions: 4
Published: over 7 years ago

10.1098/rstb.2015.0212

Ochre star mortality during the 2014 wasting disease epizootic: role of population size structure and temperature
Cited by: 100
Author(s): Morgan E. Eisenlord, Maya L. Groner, Reyn Yoshioka, Joel K. Elliott, Jeffrey Maynard, Steven C. Fradkin, Margaret Turner, Katie Pyne, Natalie Rivlin, Ruben van Hooidonk, C. Drew Harvell
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1006314

Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and Mortality
Cited by: 26
Author(s): Alexander M. Kulminski, Liyun He, Irina Culminskaya, Yury Loika, Yelena Kernogitski, Konstantin G. Arbeev, Elena Loiko, Liubov Arbeeva, Olivia Bagley, Matt Duan, Arseniy Yashkin, Fang Fang, Mikhail Kovtun, Svetlana V. Ukraintseva, Deqing Wu, Anatoliy I. Yashin
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0256147

Reactive anti-predator behavioral strategy shaped by predator characteristics
Cited by: 9
Author(s): Meredith S. Palmer, Craig Packer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0185848

Impact of social inequalities at birth on the longevity of children born 1914–1916: A cohort study
Cited by: 3
Author(s): Nicolas Todd, Sophie Le Fur, Pierre Bougnères, Alain‐Jacques Valleron
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0061919

Use of Exposure History to Identify Patterns of Immunity to Pneumonia in Bighorn Sheep (Ovis canadensis)
Cited by: 31
Author(s): Raina K. Plowright, Kezia R. Manlove, E. Frances Cassirer, Paul C. Cross, Thomas E. Besser, Peter J. Hudson
Software Mentions: 4
Published: over 13 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.1097/CCM.0000000000004747

Improving Survival of Critical Care Patients With Coronavirus Disease 2019 in England: A National Cohort Study, March to June 2020*
Cited by: 155
Author(s): John Dennis, Andrew McGovern, Sebastian J. Vollmer, Bilal A. Mateen
Software Mentions: 4
Published: almost 6 years ago

10.1002/eap.1667

Seed dispersal as an ecosystem service: frugivore loss leads to decline of a socially valued plant,<i>Capsicum frutescens</i>
Cited by: 27
Author(s): Monika Egerer, Evan C. Fricke, Haldre S. Rogers
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4599

Embryonal life histories: Desiccation plasticity and diapause in the Argentinean pearlfish<i>Austrolebias bellottii</i>
Cited by: 6
Author(s): Tom J. M. Van Dooren, Irma Varela-Lasheras
Software Mentions: 4
Published: over 7 years ago

10.1007/s10493-020-00500-7

High-quality alternative food reduces cannibalism in the predatory mite Amblyseius herbicolus (Acari: Phytoseiidae)
Cited by: 12
Author(s): Ítalo Marcossi, Morgana Maria Fonseca, Paola A. F. Carbajal, André C. Cardoso, Ângelo Pallini, Arne Janssen
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2014.00576

In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors
Cited by: 65
Author(s): Peter D. Newell, John M. Chaston, Yiping Wang, Nathan J. Winans, David R. Sannino, Adam C. N. Wong, A. Dobson, Jeanne Kagle, Angela E. Douglas
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-021-94622-6

Male diet affects female fitness and sperm competition in human- and bat-associated lineages of the common bedbug, Cimex lectularius
Cited by: 1
Author(s): Jana Křemenová, Tomáš Bartonička, Ondřej Balvín, Christian Massino, Klaus Reinhardt, Markéta Šašinková, Alfons Weig, Oliver Otti
Software Mentions: 4
Published: almost 5 years ago

10.1093/ije/dyx168

Intelligence and all-cause mortality in the 6-Day Sample of the Scottish Mental Survey 1947 and their siblings: testing the contribution of family background
Cited by: 10
Author(s): Matthew H. Iveson, Iva Čukić, Geoff Der, G. David Batty, Ian J. Deary
Software Mentions: 4
Published: almost 9 years ago

10.1016/j.esmoop.2020.100037

Expression and prognostic significance of PDGF ligands and receptors across soft tissue sarcomas
Cited by: 6
Author(s): Mehdi Brahmi, Tom Lesluyes, Armelle Dufresne, Maud Toulmonde, Antoîne Italiano, Olivier Mir, Axel Le Cesne, Thibaud Valentin, Christine Chevreau, Sylvie Bonvalot, Nicolas Penel, Jean‐Michel Coindre, Sophie Le Guellec, François Le Loarer, Marie Karanian, Jean‐Yves Blay, Frédéric Chibon
Software Mentions: 4
Published: over 5 years ago

10.1186/s13321-018-0325-4

Large scale comparison of QSAR and conformal prediction methods and their applications in drug discovery
Cited by: 91
Author(s): Nicolas Bosc, Francis Atkinson, Eloy Félix, Anna Gaulton, Anne Hersey, Andrew R. Leach
Software Mentions: 4
Published: over 7 years ago

10.3390/antiox9050402

Long Non-Coding RNA and mRNA Profiling in Early-Stage Bovine Embryos Treated with Glutathione
Cited by: 1
Author(s): Qihao Guo, Linlin Cui, Weijun Sun, Li Feng, Hao Huang, Xueming Zhao, Huabin Zhu, Weihua Du
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-15-81

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
Cited by: 89
Author(s): Kristoffer Vitting-Seerup, Bo T. Porse, Albin Sandelin, Johannes Waage
Software Mentions: 4
Published: over 12 years ago

10.1186/s12864-015-2108-x

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos
Cited by: 18
Author(s): Delasa Aghamirzaie, Dhruv Batra, Lenwood S. Heath, Andrew M. Schneider, Ruth Grene, Eva Collakova
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2164-15-636

In depth annotation of the Anopheles gambiae mosquito midgut transcriptome
Cited by: 30
Author(s): Alejandro Padrón, Alvaro Molina-Cruz, Mariam Quiñones, José M. C. Ribeiro, Urvashi N. Ramphul, Janneth Rodrigues, Kui Shen, Ashley Haile, José L. Ramirez, Carolina Barillas‐Mury
Software Mentions: 4
Published: about 12 years ago

10.1186/s12864-019-5832-9

A survey of transcriptome complexity using PacBio single-molecule real-time analysis combined with Illumina RNA sequencing for a better understanding of ricinoleic acid biosynthesis in Ricinus communis
Cited by: 23
Author(s): Lijun Wang, Xiaoling Jiang, Lei Wang, Wei Wang, Chunling Fu, Xin Yan, Xinxin Geng
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-019-6163-6

PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome
Cited by: 20
Author(s): Ke Teng, Wan Teng, Haifeng Wen, Yuesen Yue, Weier Guo, Juying Wu, Xing Fan
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-2776-1

Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates
Cited by: 28
Author(s): Nathalia Flórez-Zapata, M. Humberto Reyes-Valdés, Octavio Martínez
Software Mentions: 4
Published: about 10 years ago

10.1186/s12864-019-5895-7

Comparative physiology and transcriptome analysis allows for identification of lncRNAs imparting tolerance to drought stress in autotetraploid cassava
Cited by: 21
Author(s): Xiao Liang, Xianwen Shang, Sheng Cao, Xuewen Xie, Wendan Zeng, Lingyun Lu, Songbi Chen, Huabing Yan
Software Mentions: 4
Published: about 7 years ago

10.1186/s12865-020-00344-1

Identification of differentially expressed circulating exosomal lncRNAs in IgA nephropathy patients
Cited by: 17
Author(s): Na Guo, Qin Zhou, Xiang Huang, Jia-Kuo Yu, Qianqian Han, Baoting Nong, Yuanyan Xiong, Peifeng Liang, Jiajia Li, Min Feng, Jun Lv, Qiongqiong Yang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12870-020-02637-4

Revealing the full-length transcriptome of caucasian clover rhizome development
Cited by: 13
Author(s): Xiujie Yin, Kun Yi, Yihang Zhao, Yue Hu, Li Xu, Taotao He, Jiaxue Liu, Guowen Cui
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12870-019-2087-1

Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)
Cited by: 34
Author(s): Xing-Zheng Fu, Xiaoyong Zhang, Jie-Ya Qiu, Xue Zhou, Meng Yuan, Yuan He, Chun ChangPin, Li Cao, Lili Li, Peng LiangZhi
Software Mentions: 4
Published: over 6 years ago

10.1155/2018/1264697

Identification of 170 New Long Noncoding RNAs in<i> Schistosoma mansoni</i>
Cited by: 17
Author(s): Victor Fernandes de Oliveira, Lauro A. G. Moares, Ester Alves Mota, Liana K. Jannotti-Passos, Paulo Marcos Zech Coelho, Ana Carolina Alves de Mattos, Flávia Fernanda Búbula Couto, Brian E. Caffrey, Annalisa Marsico, Renata Guerra‐Sá
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-020-71905-y

Whole transcriptome approach to evaluate the effect of aluminium hydroxide in ovine encephalon
Cited by: 9
Author(s): Endika Varela-Martínez, Martin Bilbao‐Arribas, Naiara Abendaño, Javier Asín, Marta Pérez, Damián F. de Andrés, Lluís Luján, Begoña M. Jugo
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80635-0

Differentially expressed lncRNAs in liver tissues of TX mice with hepatolenticular degeneration
Cited by: 5
Author(s): Juan Zhang, Ying Ma, Denghui Xie, Bao Yuan-cheng, Weiren Yang, Han Wang, Huaizhou Jiang, Hui Han, Ting Dong
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.25607

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation
Cited by: 47
Author(s): M. Joaquina Delás, Leah R. Sabin, Egor Dolzhenko, Simon Knott, Ester Munera Maravilla, Benjamin T. Jackson, Sophia A Wild, Tatjana Kovačević, Eva Maria Stork, Meng Zhou, Nicolas Erard, Emily Lee, David R. Kelley, Mareike Roth, Inês Barbosa, Johannes Zuber, John L. Rinn, Andrew D. Smith, Gregory J. Hannon
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms20051182

Temporal Splicing Switches in Elements of the TNF-Pathway Identified by Computational Analysis of Transcriptome Data for Human Cell Lines
Cited by: 6
Author(s): Nikolaï Genov, Alireza Basti, Marconi Abreu, Angela Relógio
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21062079

Whole-Genome Uterine Artery Transcriptome Profiling and Alternative Splicing Analysis in Rat Pregnancy
Cited by: 4
Author(s): Kathirvel Gopalakrishnan, Sathish Kumar
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1007139

An efficient Bayesian meta-analysis approach for studying cross-phenotype genetic associations
Cited by: 40
Author(s): Årindam Majumdar, Tanushree Haldar, Sourabh Bhattacharya, John S. Witte
Software Mentions: 4
Published: over 8 years ago

10.1038/s41597-020-00792-9

A gridded establishment dataset as a proxy for economic activity in China
Cited by: 14
Author(s): Lei Dong, Xiaohui Yuan, Meng Li, Carlo Ratti, Yu Liu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13637-016-0044-y

A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB
Cited by: 2
Author(s): Shriprakash Sinha
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12859-019-2804-7

pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)
Cited by: 40
Author(s): Stefan Graw, Rosalyn Henn, Jeffrey Thompson, Devin C. Koestler
Software Mentions: 4
Published: over 7 years ago

10.1186/s13073-018-0575-9

Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins
Cited by: 60
Author(s): Amy P Webster, Darren Plant, Simone Ecker, Flore Zufferey, Jordana T. Bell, Andrew Feber, Dirk S. Paul, Stephan Beck, Anne Barton, Frances Williams, Jane Worthington
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-02810-0

Cumulative impacts: thermally bleached corals have reduced capacity to clear deposited sediment
Cited by: 29
Author(s): Pia Bessell-Browne, Andrew P. Negri, Rebecca Fisher, Peta L. Clode, Ross Jones
Software Mentions: 4
Published: about 9 years ago

10.1098/rsif.2017.0213

The coefficient of determination <i>R</i> ² and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded
Cited by: 1,451
Author(s): Shinichi Nakagawa, Paul C. D. Johnson, Holger Schielzeth
Software Mentions: 4
Published: almost 9 years ago

10.15252/msb.20166869

Strand‐specific, high‐resolution mapping of modified RNA polymerase II
Cited by: 46
Author(s): Laura Milligan, Vân Anh Huynh-Thu, Clémentine Delan-Forino, Alex Tuck, Elisabeth Petfalski, Rodrigo Lombraña, Guido Sanguinetti, Grzegorz Kudla, David Tollervey
Software Mentions: 4
Published: about 10 years ago

10.12688/f1000research.19426.1

Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Cited by: 2
Author(s): Andrian Yang, Jiangjun Tang, Michael Troup, Joshua W. K. Ho
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-40127-2

Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis
Cited by: 7
Author(s): Elisavet Kaitetzidou, Ioanna Katsiadaki, Jacques Lagnel, Efthimia Antonopoulou, Elena Sarropoulou
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.6509

cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer
Cited by: 1
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 4
Published: over 7 years ago

10.1186/s13326-015-0026-0

Ambiguity and variability of database and software names in bioinformatics
Cited by: 8
Author(s): Geraint Duck, Aleksandar Kovačević, David L. Robertson, Robert Stevens, Goran Nenadić
Software Mentions: 4
Published: about 11 years ago

10.1186/s13321-018-0327-2

LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Cited by: 29
Author(s): Wahed Hemati, Alexander Mehler
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms19092483

IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields
Cited by: 18
Author(s): Yumeng Liu, Xiaolong Wang, Bin Liu
Software Mentions: 4
Published: almost 8 years ago

10.16966/2380-5536.170

Validity Study of the R-PLA, a Resilience Scale for People Living with HIV
Cited by: 1
Author(s): Jinxiang Hu, Julianne M. Serovich, Monique J. Brown, Judy A. Kimberly, Yi-Hsin Chen
Software Mentions: 4
Published: over 7 years ago

10.1098/rsos.201121

Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
Cited by: 31
Author(s): Li Cai, Lei Ren, Yongheng Wang, Wenjie Xie, Guangyu Zhu, Hao Gao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-49226-6

Prediction of soil available water-holding capacity from visible near-infrared reflectance spectra
Cited by: 28
Author(s): Michael Blaschek, Pierre Roudier, Matteo Poggio, C. B. Hedley
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2164-12-364

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing
Cited by: 82
Author(s): Peter L. Chang, Joseph P. Dunham, Sergey V. Nuzhdin, Michelle N. Arbeitman
Software Mentions: 4
Published: about 15 years ago

10.1186/s13742-015-0046-9

RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Cited by: 118
Author(s): Vikas Gupta, April D Estrada, Ivory C. Blakley, Robert W. Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhøj Andersen, Allan Brown, Mary Ann Lila, Ann E. Loraine
Software Mentions: 4
Published: over 11 years ago

10.3390/biology10070658

Targeted Lipidomic Analysis of Aqueous Humor Reveals Signaling Lipid-Mediated Pathways in Primary Open-Angle Glaucoma
Cited by: 7
Author(s): Nadezhda V. Azbukina, Dmitry V. Chistyakov, Sergei V. Goriainov, В. И. Котелин, Е. В. Федосеева, S. Yu. Petrov, Marina G. Sergeeva, Elena N. Iomdina, Evgeni Yu Zernii
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0124467

A Four-Compartment Metabolomics Analysis of the Liver, Muscle, Serum, and Urine Response to Polytrauma with Hemorrhagic Shock following Carbohydrate Prefeed
Cited by: 15
Author(s): Nancy E. Witowski, Elizabeth R. Lusczek, Charles Determan, Daniel R. Lexcen, Kristine E. Mulier, Beverly Gaul Ostrowski, Greg J. Beilman
Software Mentions: 4
Published: over 11 years ago

10.1111/gcb.13357

Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi‐omics approach
Cited by: 75
Author(s): Melody S. Clark, Ulf Sommer, Jaspreet K Sihra, Michael A. S. Thorne, Simon A. Morley, Michelle King, Mark R. Viant
Software Mentions: 4
Published: about 10 years ago