10.3389/fimmu.2021.684052

Low Energy Electron Irradiation Is a Potent Alternative to Gamma Irradiation for the Inactivation of (CAR-)NK-92 Cells in ATMP Manufacturing
Cited by: 11
Author(s): Lia Walcher, Ann-Kathrin Kistenmacher, Charline Sommer, Sebastian Böhlen, Christina Ziemann, Susann Dehmel, Armin Braun, U. Sandy Tretbar, Stephan Klöß, Axel Schambach, Michael Morgan, Dennis Löffler, Christoph Kämpf, Conny Blumert, Kristin Reiche, Jana Beckmann, Ulla König, Bastian Standfest, Martin Thoma, Gustavo R. Makert, Sebastian Ulbert, Uta Kossatz-Böhlert, Ulrike Köhl, Anna Dünkel, Frank Stephan
Software Mentions: 4
Published: about 5 years ago

10.1093/aobpla/plaa047

Difference between emergent aquatic and terrestrial monocotyledonous herbs in relation to the coordination of leaf stomata with vein traits
Cited by: 6
Author(s): Wanli Zhao, Pei‐Li Fu, Guolan Liu, Ping Zhao
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-90720-7

Benthic estuarine communities' contribution to bioturbation under the experimental effect of marine heatwaves
Cited by: 3
Author(s): Marina Dolbeth, O. Babe, Dimitri Araujo Costa, Ana P. Mucha, P.G. Cardoso, Francisco Arenas
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers13102306

Evidence of Cooperation between Hippo Pathway and RAS Mutation in Thyroid Carcinomas
Cited by: 3
Author(s): Thaise Nayane Ribeiro Carneiro, Larissa Valdemarin Bim, Vanessa Candiotti Buzatto, Vanessa Galdeno, Paula Fontes Asprino, Eunjung Alice Lee, Pedro A. F. Galante, Janete M. Cerutti
Software Mentions: 4
Published: about 5 years ago

10.1186/s12989-017-0239-8

Maternal engineered nanomaterial inhalation during gestation alters the fetal transcriptome
Cited by: 36
Author(s): Phoebe A. Stapleton, Quincy A. Hathaway, C.E. Nichols, Alaeddin B. Abukabda, Mark V. Pinti, Danielle L. Shepherd, Carroll R. McBride, Jinghai Yi, Vincent Castranova, John M. Hollander, Timothy R. Nurkiewicz
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers13184518

The Tumor Microenvironment-Dependent Transcription Factors AHR and HIF-1α Are Dispensable for Leukemogenesis in the Eµ-TCL1 Mouse Model of Chronic Lymphocytic Leukemia
Cited by: 3
Author(s): Susanne Gonder, Anne Largeot, Ernesto Gargiulo, Sandrine Pierson, Iria Fernandez Botana, Giulia Pagano, Jérôme Paggetti, Etienne Moussay
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0240885

Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats
Cited by: 2
Author(s): J. L. Webb, Amanda Bries, Brooke Vogel, Claudia Carrillo, Lily Harvison, Timothy A. Day, Michael J. Kimber, Rudy J. Valentine, Matthew J. Rowling, Stephanie Clark, Elizabeth McNeill, Kevin L. Schalinske
Software Mentions: 4
Published: over 5 years ago

10.3390/ani10040577

Improvement of Cecal Commensal Microbiome Following the Insect Additive into Chicken Diet
Cited by: 30
Author(s): Agata Józefiak, Abdelbasset Benzertiha, Bartosz Kierończyk, Anna Łukomska, Izabela Wesołowska, Mateusz Rawski
Software Mentions: 4
Published: over 6 years ago

10.1098/rsbl.2019.0380

Evidence for individual discrimination and numerical assessment in collective antipredator behaviour in wild jackdaws ( <i>Corvus monedula</i> )
Cited by: 18
Author(s): Jenny R. Coomes, Guillam E. McIvor, Alex Thornton
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0136765

In-Depth Duodenal Transcriptome Survey in Chickens with Divergent Feed Efficiency Using RNA-Seq
Cited by: 35
Author(s): Guoqiang Yi, Jiahui Yuan, Huijuan Bi, Wei Yan, Ning Yang, Lujiang Qu
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0232189

Investigating the epithelial barrier and immune signatures in the pathogenesis of equine insect bite hypersensitivity
Cited by: 10
Author(s): Iva Cvitaš, Simone Oberhänsli, Tosso Leeb, Martina Dettwiler, Eliane J. Müller, Rémy Bruggman, Eliane Marti
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1004595

The Groucho Co-repressor Is Primarily Recruited to Local Target Sites in Active Chromatin to Attenuate Transcription
Cited by: 26
Author(s): Aamna K Kaul, Eugene F. Schuster, Barbara Jennings
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0180751

Increased dermal collagen bundle alignment in systemic sclerosis is associated with a cell migration signature and role of Arhgdib in directed fibroblast migration on aligned ECMs
Cited by: 14
Author(s): Lizhi Cao, Robert Lafyatis, Linda C. Burkly
Software Mentions: 4
Published: about 9 years ago

10.3390/ani11041175

Is There a Link between Suckling and Manipulation Behavior during Rearing in Pigs?
Cited by: 1
Author(s): Friederike K. Warns, Mehmet Gültaş, Astrid L. van Asten, Tobias Scholz, M. Gerken
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-96033-z

Combined genetic and chemical screens indicate protective potential for EGFR inhibition to cardiomyocytes under hypoxia
Cited by: 3
Author(s): Juho Heliste, Anne Jokilammi, Katri Vaparanta, Ilkka Paatero, Klaus Elenius
Software Mentions: 4
Published: almost 5 years ago

10.1186/s41512-020-00074-3

State of the art in selection of variables and functional forms in multivariable analysis—outstanding issues
Cited by: 99
Author(s): Willi Sauerbrei, Aris Perperoglou, Matthias Schmid, Michal Abrahamowicz, Heiko Becher, Harald Binder, Daniela Dunkler, Frank E. Harrell, Patrick Royston, Georg Heinze
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0214559

DNA methylation, microRNA expression profiles and their relationships with transcriptome in grass-fed and grain-fed Angus cattle rumen tissue
Cited by: 9
Author(s): Yaokun Li, José A. Carrillo, Yi Ding, Yanghua He, Chunping Zhao, Jianan Liu, Zan Liu, Jiuzhou Song
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0239367

Mining a human transcriptome database for chemical modulators of NRF2
Cited by: 18
Author(s): John P. Rooney, Brian N. Chorley, Steven Hiemstra, Steven Wink, Xuting Wang, Douglas A. Bell, Bob van de Water, J. Christopher Corton
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0166944

Transcriptomic Analysis Shows Decreased Cortical Expression of NR4A1, NR4A2 and RXRB in Schizophrenia and Provides Evidence for Nuclear Receptor Dysregulation
Cited by: 23
Author(s): Susan M. Corley, Shan-Yuan Tsai, Marc R. Wilkins, Cynthia Shannon Weickert
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0119254

Goodness-of-Fit Tests and Model Diagnostics for Negative Binomial Regression of RNA Sequencing Data
Cited by: 12
Author(s): Gu Mi, Yanming Di, Daniel W. Schafer
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0065598

diffReps: Detecting Differential Chromatin Modification Sites from ChIP-seq Data with Biological Replicates
Cited by: 292
Author(s): Li Shen, Ning‐Yi Shao, Xiaochuan Liu, Ian Maze, Jian Feng, Eric J. Nestler
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0240975

RNA sequencing of whole blood in dogs with primary immune-mediated hemolytic anemia (IMHA) reveals novel insights into disease pathogenesis
Cited by: 5
Author(s): Corie Borchert, Adam Herman, Megan Roth, Aimee C. Brooks, Steven G. Friedenberg
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12920-020-00749-2

Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression
Cited by: 6
Author(s): Damien Kaukonen, Riina Kaukonen, Lélia Polit, Bryan T. Hennessy, Riikka Lund, Stephen F. Madden
Software Mentions: 4
Published: about 6 years ago

10.1038/s42003-021-01784-0

A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus
Cited by: 36
Author(s): Alison J. Hardcastle, Petra Lišková, Yelena Bykhovskaya, Bennet J McComish, Alice E. Davidson, Chris F. Inglehearn, Xiaohui Li, Hélène Choquet, Mahmoud Habeeb, Sionne E. M. Lucas, Srujana Sahebjada, Nikolas Pontikos, Karla E. Rojas López, Anthony P Khawaja, Manir Ali, Ľubica Ďuďáková, Pavlína Skalická, Bart T. H. van Dooren, Annette J M Geerards, Christoph Haudum, Valeria Lo Faro, Abi Tenen, Mark James Simcoe, Karina Patasova, Darioush Yarrand, Jie Yin, Salina Siddiqui, Anthony J. Rice, Layal Abi Farraj, Yii Der Ida Chen, Jugnoo S Rahi, Ronald M. Krauss, Elizabeth Theusch, Jac Charlesworth, Loretta Szczotka-Flynn, Carmel Toomes, Magda A. Meester-Smoor, Andrea J. Richardson, Paul Mitchell, Kent D. Taylor, Ronald B. Melles, Anthony J. Aldave, Richard A. Mills, Ke Cao, Elsie Chan, Mark Daniell, Jie Jin Wang, Jerome I. Rotter, Alex W. Hewitt, Stuart MacGregor, Caroline C W Klaver, Wishal D. Ramdas, Jamie E Craig, Sudha K. Iyengar, David O’Brart, Eric Jorgenson, Paul N. Baird, Yaron S. Rabinowitz, Kathryn P. Burdon, Chris Hammond, Stephen Tuft, Pirro G. Hysi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0215767

Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities
Cited by: 11
Author(s): François Thomas, James T. Morris, Cathleen Wigand, Stefan M. Sievert
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.5944

Differences in persistence between dogs and wolves in an unsolvable task in the absence of humans
Cited by: 27
Author(s): Akshay R. Rao, Lara Bernasconi, Martina Lazzaroni, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0238385

Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors
Cited by: 3
Author(s): Maryellen Spencer, Abraham C. Cullom, William J. Rhoads, Amy Pruden, Marc Edwards
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40104-021-00616-9

Identification of key genes affecting porcine fat deposition based on co-expression network analysis of weighted genes
Cited by: 17
Author(s): Kai Xing, Huatao Liu, Fengxia Zhang, Yibing Liu, Yong Shi, Xiangdong Ding, Chuduan Wang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0214677

PAN-INTACT enables direct isolation of lineage-specific nuclei from fibrous tissues
Cited by: 8
Author(s): Samadrita Bhattacharyya, Adwait Amod Sathe, Minoti Bhakta, Chao Xing, Nikhil V. Munshi
Software Mentions: 4
Published: over 7 years ago

10.1186/1475-2840-13-84

Impact of serum omentin-1 levels on cardiac prognosis in patients with heart failure
Cited by: 62
Author(s): Takatsune Narumi, Tetsu Watanabe, Shinpei Kadowaki, Daisuke Kinoshita, Masahiro Yokoyama, Yuki Honda, Yoichiro Otaki, Satoshi Nishiyama, Hiroki Takahashi, Takanori Arimoto, Tetsuro Shishido, Takuya Miyamoto, Isao Kubota
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0219980

Identification of pathological RA endotypes using blood-based biomarkers reflecting tissue metabolism. A retrospective and explorative analysis of two phase III RA studies
Cited by: 10
Author(s): Joseph Blair, Cecilie L. Bager, Adam Platt, Morten A. Karsdal, Anne‐Christine Bay‐Jensen
Software Mentions: 4
Published: about 7 years ago

10.1186/s13148-020-00973-8

5-Hydroxymethylcytosine profiles of cfDNA are highly predictive of R-CHOP treatment response in diffuse large B cell lymphoma patients
Cited by: 9
Author(s): Hangyu Chen, Weilong Zhang, Lei Zhang, Ping Yang, Fang Li, Zeruo Yang, Jing Wang, Pei Meng, Yun Hong, Changjian Yan, Wei Li, Jia Liu, Nuo Xu, Long Chen, Xiu-Bing Xiao, Yan Qin, Xiaohong He, Hui Liu, Haichuan Zhu, Chuan He, Jian Lin, Hongmei Jing
Software Mentions: 4
Published: over 5 years ago

10.1186/s13148-018-0576-y

Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology
Cited by: 14
Author(s): Stefano Amatori, Giuseppe Persico, Claudio Paolicelli, Roman Hillje, Nora Sahnane, Francesco Corini, Daniela Furlan, Lucilla Luzi, Saverio Minucci, Marco Giorgio, Pier Giuseppe Pelicci, Mirco Fanelli
Software Mentions: 4
Published: over 7 years ago

10.3390/nu13051559

Maternal Vegetable and Fruit Consumption during Pregnancy and Its Effects on Infant Gut Microbiome
Cited by: 13
Author(s): Hsien Yu Fan, Yu Tang Tung, Yu Yang, Justin Bo-Kai Hsu, Cheng Yang Lee, Tzu Hao Chang, Emily Chia Yu Su, Rong Hong Hsieh, Yang Ching Chen
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.679458

Comparative Proteomic Analysis Reveals Varying Impact on Immune Responses in Phorbol 12-Myristate-13-Acetate-Mediated THP-1 Monocyte-to-Macrophage Differentiation
Cited by: 21
Author(s): Sneha M. Pinto, Hera Kim, Yashwanth Subbannayya, Miriam S. Giambelluca, Korbinian Bösl, Liv Ryan, Animesh Sharma, Richard K. Kandasamy
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.567931

A Ten-N6-Methyladenosine (m6A)-Modified Gene Signature Based on a Risk Score System Predicts Patient Prognosis in Rectum Adenocarcinoma
Cited by: 10
Author(s): Wei Huang, Gen Li, Zihang Wang, Lin Zhou, Xin Yin, Tianshu Yang, Pei Wang, Xu Teng, Yajuan Feng, Hefen Yu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0190550

MicroRNA signatures of endogenous Huntingtin CAG repeat expansion in mice
Cited by: 36
Author(s): Peter Langfelder, Fuying Gao, Nan Wang, David Howland, Seung Kwak, Thomas Vogt, Jeffrey S. Aaronson, Jim Rosinski, Giovanni Coppola, Steve Horvath, Xiangdong Yang
Software Mentions: 4
Published: over 8 years ago

10.1186/s12986-019-0366-3

A novel lncRNA-miRNA-mRNA triple network identifies lncRNA TWF1 as an important regulator of miRNA and gene expression in coronary artery disease
Cited by: 15
Author(s): Miao Liu, Rui-Xing Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: about 7 years ago

10.3389/fimmu.2020.594540

The Monocytes That Repopulate in Mice After Cyclophosphamide Treatment Acquire a Neutrophil Precursor Gene Signature and Immunosuppressive Activity
Cited by: 5
Author(s): Zhi Chun Ding, Nada S. Aboelella, Locke J. Bryan, Huidong Shi, Gang Zhou
Software Mentions: 4
Published: over 5 years ago

10.1111/1365-2656.12282

Long‐term phenological trends, species accumulation rates, aphid traits and climate: five decades of change in migrating aphids
Cited by: 118
Author(s): James R. Bell, L. J. Alderson, Daniela Izera, T. Kruger, Sue Parker, J. Pickup, C. R. Shortall, M. S. Taylor, P. J. Verrier, R. Harrington
Software Mentions: 4
Published: almost 12 years ago

10.3389/fcell.2020.571501

Chromatin and Transcriptional Response to Loss of TBX1 in Early Differentiation of Mouse Cells
Cited by: 4
Author(s): Andrea Cirino, Ilaria Aurigemma, Monica Franzese, Gabriella Lania, Dario Righelli, Rosa Ferrentino, Elizabeth Illingworth, Claudia Angelini, Antonio Baldini
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008661

An integrated analysis of cell-type specific gene expression reveals genes regulated by REVOLUTA and KANADI1 in the Arabidopsis shoot apical meristem
Cited by: 15
Author(s): Hasthi Ram, Sudeep Sahadevan, Nittaya Gale, Monica Pia Caggiano, Xiulian Yu, Carolyn Ohno, Marcus G. Heisler
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008390

Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
Cited by: 31
Author(s): Rudo Kieft, Yang Zhang, Alexandre P. Marand, Jose Dagoberto Moran, Robert Bridger, Lance Wells, Robert J. Schmitz, Robert Sabatini
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.630988

Transcriptomic Profiling of Fibropapillomatosis in Green Sea Turtles (Chelonia mydas) From South Texas
Cited by: 9
Author(s): Nicholas B. Blackburn, Ana C Leandro, Nina Nahvi, Mariana A. Devlin, Marcelo Leandro, Ignacio Martinez Escobedo, Juan M. Peralta, Jeff George, Brian A. Stacy, Thomas W. deMaar, John Blangero, Megan Keniry, Joanne E. Curran
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1006778

Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness
Cited by: 11
Author(s): Adi Hendler, Edgar M. Medina, Anastasiya Kishkevich, Mehtap Abu-Qarn, Steffi Klier, Nicolas E. Buchler, Robertus A.M. de Bruin, Amir Aharoni
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0166748

Human Disturbance during Early Life Impairs Nestling Growth in Birds Inhabiting a Nature Recreation Area
Cited by: 16
Author(s): Carolina Remacha, Juan A. Delgado, Mateja Bulaic, Javier Pérez‐Tris
Software Mentions: 4
Published: over 9 years ago

10.1534/g3.120.401166

DAF-16 and SMK-1 Contribute to Innate Immunity During Adulthood in<i>Caenorhabditis elegans</i>
Cited by: 14
Author(s): Daniel R. McHugh, Elena Koumis, Paul Jacob, Jennifer Goldfarb, Michelle Schlaubitz-Garcia, Safae Bennani, Paul Regan, Prem Patel, Matthew J. Youngman
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1005184

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans
Cited by: 111
Author(s): Li Zhao, Janneke Wit, Nicolas Svetec, David J. Begun
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pgen.1008452

Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania
Cited by: 12
Author(s): Megan A. Sloan, Karen Brooks, Thomas D. Otto, Mandy Sanders, James A. Cotton, Petros Ligoxygakis
Software Mentions: 4
Published: over 6 years ago

10.3389/fphar.2021.673831

MMP24 Contributes to Neuropathic Pain in an FTO-Dependent Manner in the Spinal Cord Neurons
Cited by: 6
Author(s): Longfei Ma, Yangyuxin Huang, Fengjiang Zhang, Dave Schwinn Gao, Na Sun, Jinxuan Ren, Suyun Xia, Jia Li, Xiujuan Peng, Yu Lu, Bao‐Chun Jiang, Min Yan
Software Mentions: 4
Published: about 5 years ago

10.1186/s13148-019-0690-5

ARID1A facilitates KRAS signaling-regulated enhancer activity in an AP1-dependent manner in colorectal cancer cells
Cited by: 34
Author(s): Madhobi Sen, Xin Wang, Feda H. Hamdan, Jacobe Rapp, Jessica Eggert, Robyn Laura Kosinsky, Florian Wegwitz, Ana P. Kutschat, Fereshteh Younesi, Jochen Gaedcke, Marian Grade, Elisabeth Heßmann, Argyris Papantonis, Philipp Ströbel, Steven A. Johnsen
Software Mentions: 4
Published: about 7 years ago

10.3390/genes10060433

BarkBase: Epigenomic Annotation of Canine Genomes
Cited by: 26
Author(s): Kate Megquier, Diane P. Genereux, Jessica P. Hekman, Ross Swofford, Jason Turner-Maier, Jeremy Johnson, Jacob Alonso, Li Xue, Kathleen M. Morrill, Lynne J. Anguish, Michele Koltookian, Brittney Logan, Claire R. Sharp, Lluís Ferrer, Kerstin Lindblad‐Toh, Vicki N. Meyers-Wallen, Andrew M. Hoffman, Elinor K. Karlsson
Software Mentions: 4
Published: about 7 years ago

10.1186/s13148-021-01115-4

Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells
Cited by: 7
Author(s): Johanna Huoman, David Martínez-Enguita, Elin Olsson, Jan Ernerudh, Lennart Nilsson, Karel Duchén, Mika Gustafsson, Maria C. Jenmalm
Software Mentions: 4
Published: about 5 years ago

10.1093/bioinformatics/btw116

Goldilocks: a tool for identifying genomic regions that are ‘just right’
Cited by: 2
Author(s): Samuel M. Nicholls, Amanda Clare, Joshua C. Randall
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1007127

A novel prospective isolation of murine fetal liver progenitors to study in utero hematopoietic defects
Cited by: 7
Author(s): Julia Draper, Patrycja Sroczyńska, Muhammad Zaki Hidayatullah Fadlullah, Rahima Patel, Gillian Newton, Wolfgang Breitwieser, Valérie Kouskoff, Georges Lacaud
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1006964

rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline
Cited by: 56
Author(s): Devanshi Jain, Cem Meydan, Julian Lange, Corentin Claeys Bouuaert, Nathalie Lailler, Christopher E. Mason, Kathryn V. Anderson, Scott Keeney
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pgen.1006938

Comparative transcriptomes of adenocarcinomas and squamous cell carcinomas reveal molecular similarities that span classical anatomic boundaries
Cited by: 37
Author(s): Eric W. Lin, Tatiana A. Karakasheva, Dong Jin Lee, Ju-Seog Lee, Qi Long, Adam J. Bass, Kwok Kin Wong, Anil K. Rustgi
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pgen.1008326

Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome
Cited by: 31
Author(s): Paja Sijacic, Dylan H Holder, Marko Bajic, Roger B. Deal
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pgen.1009770

The genetics and evolution of eye color in domestic pigeons (Columba livia)
Cited by: 5
Author(s): Si Si, Xiao Xu, Yan Zhuang, Xiao‐Dong Gao, Honghai Zhang, Zhengting Zou, Shu‐Jin Luo
Software Mentions: 4
Published: almost 5 years ago

10.1093/jas/skaa181

The effect of maternal antibiotic use in sows on intestinal development in offspring
Cited by: 10
Author(s): Astrid de Greeff, Dirkjan Schokker, Petra Roubos-van den Hil, P. Ramaekers, S.A. Vastenhouw, Frank Harders, Alex Bossers, M.A. Smits, Johanna M.J. Rebel
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-95308-9

ACE2 protein expression within isogenic cell lines is heterogeneous and associated with distinct transcriptomes
Cited by: 20
Author(s): Emily Sherman, Brian T. Emmer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1008617

Inhibition of the oligosaccharyl transferase in Caenorhabditis elegans that compromises ER proteostasis suppresses p38-dependent protection against pathogenic bacteria
Cited by: 8
Author(s): Dae‐Eun Jeong, Yujin Lee, Seokjin Ham, Dong-Yeop Lee, Sujeong Kwon, Hae‐Eun H. Park, Sunyoung Hwang, Joo‐Yeon Yoo, Tae-Young Roh, Seung-Jae Lee
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1009734

Recovery from heat shock requires the microRNA pathway in Caenorhabditis elegans
Cited by: 10
Author(s): Delaney C Pagliuso, Devavrat M Bodas, Amy E. Pasquinelli
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12967-020-02679-0

Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors
Cited by: 13
Author(s): Li Wang, Zhixuan Ren, Bentong Yu, Jian Tang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0094834

Association of Heart-Type Fatty Acid-Binding Protein with Cardiovascular Risk Factors and All-Cause Mortality in the General Population: The Takahata Study
Cited by: 37
Author(s): Yoichiro Otaki, Tetsu Watanabe, Hiroki Takahashi, A Hirayama, Takatsune Narumi, Shinpei Kadowaki, Yuki Honda, Takanori Arimoto, Tetsuro Shishido, Takuya Miyamoto, Tsuneo Konta, Yoko Shibata, Akira Fukao, Makoto Daimon, Yoshiyuki Ueno, Takeshi Kato, Takamasa Kayama, Isao Kubota
Software Mentions: 4
Published: about 12 years ago

10.1111/pbi.12898

A <i>Vitis vinifera</i> basic helix–loop–helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield
Cited by: 34
Author(s): Sung Don Lim, Won Cheol Yim, Degao Liu, Rongbin Hu, Xiaohan Yang, John C. Cushman
Software Mentions: 4
Published: over 8 years ago

10.1111/pbi.13586

The chromosome‐scale reference genome of safflower (<i>Carthamus tinctorius</i>) provides insights into linoleic acid and flavonoid biosynthesis
Cited by: 48
Author(s): Zhihua Wu, Hong Liu, Wei Zhan, Zhichao Yu, Erdai Qin, Shuo Liu, Tiange Yang, Niyan Xiang, Dave Kudrna, Yan Chen, Seung‐Hee Lee, Gang Li, Rod A. Wing, Jiao Liu, Hairong Xiong, Chen Xia, Yongzhong Xing, Jian Wei Zhang, Rui Qin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-26854-y

Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness
Cited by: 23
Author(s): Pascal Montoro, Shizhou Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie‐Laure Martin‐Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto, Kuswanhadi
Software Mentions: 4
Published: about 8 years ago

10.1186/s12967-021-02804-7

Cerebrospinal fluid cells immune landscape in multiple sclerosis
Cited by: 11
Author(s): Zijian Li, Yongchao Liu, Aili Jia, Yueran Cui, Juan Feng
Software Mentions: 4
Published: over 5 years ago

10.1152/physiolgenomics.00057.2018

Salt stress in the renal tubules is linked to TAL-specific expression of uromodulin and an upregulation of heat shock genes
Cited by: 7
Author(s): Lesley Graham, Alisha Aman, Desmond Campbell, Julian J. Augley, Delyth Graham, Martin W. McBride, Niall J. Fraser, Nicholas R. Ferreri, Anna F. Dominiczak, Sandosh Padmanabhan
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-84691-y

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress
Cited by: 12
Author(s): Renée L. Eriksen, Lillian K. Padgitt-Cobb, M. Shaun Townsend, Jimmy C. Henning
Software Mentions: 4
Published: over 5 years ago

10.1523/JNEUROSCI.2102-18.2018

Multimodal Integration and Vividness in the Angular Gyrus During Episodic Encoding and Retrieval
Cited by: 61
Author(s): Roni Tibon, Delia Fuhrmann, Daniel Levy, Jon S. Simons, Richard N. Henson
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.26713

Action history influences subsequent movement via two distinct processes
Cited by: 36
Author(s): Welber Marinovic, Eugene Poh, Aymar de Rugy, Timothy J. Carroll
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.660

Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: about 13 years ago

10.3389/fimmu.2021.691142

Dynamic Network Biomarker of Pre-Exhausted CD8+ T Cells Contributed to T Cell Exhaustion in Colorectal Cancer
Cited by: 16
Author(s): Jiaqi Hu, Chongyin Han, Jiayuan Zhong, Huisheng Liu, Rui Li, Wei Luo, Pei Chen, Fei Ling
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0122143

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Cited by: 27
Author(s): Pushpinder Bawa, Sajna Zackaria, Mohit Verma, Saurabh Gupta, Srivatsan Raghunathan, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 4
Published: about 11 years ago

10.1098/rstb.2015.0040

Loss of neurogenesis in<i>Hydra</i>leads to compensatory regulation of neurogenic and neurotransmission genes in epithelial cells
Cited by: 42
Author(s): Yvan Wenger, Wanda Christa Buzgariu, Brigitte Galliot
Software Mentions: 4
Published: over 10 years ago

10.7717/peerj.8952

The corepressor NCOR1 and OCT4 facilitate early reprogramming by suppressing fibroblast gene expression
Cited by: 6
Author(s): Georgina Peñalosa-Ruiz, Klaas W. Mulder, G.J.C. Veenstra
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.5583

Assessment of the bacterial community structure in shallow and deep sediments of the Perdido Fold Belt region in the Gulf of Mexico
Cited by: 22
Author(s): Ma. Fernanda Sánchez-Soto Jiménez, Daniel Cerqueda‐García, Jorge L. Montero-Muñoz, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.9423

Highly diverse root endophyte bacterial community is driven by growth substrate and is plant genotype-independent in common bean (<i>Phaseolus vulgaris</i> L.)
Cited by: 10
Author(s): Aarón Barraza, Juan Carlos Vizuet-de-Rueda, Raúl Álvarez-Venegas
Software Mentions: 4
Published: about 6 years ago

10.1186/s13071-021-04859-3

Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome
Cited by: 11
Author(s): Ondřej Cinek, Katerina Polackova, Rasha Odeh, Abeer Alassaf, Lenka Kramná, Mary Ann Ugochi Ibekwe, Edna Majaliwa, Gunduz Ahmadov, Bashir Mukhtar Elwasila Elmahi, Hanan Mekki, Sami Oikarinen, Jan Lebl, Mohammed A. Abdullah
Software Mentions: 4
Published: almost 5 years ago

10.1515/med-2020-0142

An immune-relevant signature of nine genes as a prognostic biomarker in patients with gastric carcinoma
Cited by: 1
Author(s): Bing Wang, Yang Zhang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-79379-8

Upregulation of 5′-terminal oligopyrimidine mRNA translation upon loss of the ARF tumor suppressor
Cited by: 2
Author(s): Kyle A. Cottrell, Ryan C. Chiou, Jason D. Weber
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.53459

The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair
Cited by: 28
Author(s): Tao Huang, Shenli Yuan, Lei Gao, Mengjing Li, Xiaochen Yu, Jianhong Zhan, Yingying Yin, Chao Liu, Chuanxin Zhang, Gang Lü, Wei Li, Jiang Liu, Zi‐Jiang Chen, Hongbin Liu
Software Mentions: 4
Published: about 6 years ago

10.1007/s00401-020-02176-0

Congenic expression of poly-GA but not poly-PR in mice triggers selective neuron loss and interferon responses found in C9orf72 ALS
Cited by: 36
Author(s): Katherine D. LaClair, Qihui Zhou, Meike Michaelsen, Benedikt Wefers, Monika S. Brill, Aleksandar Janjic, Birgit Rathkolb, Daniel Farny, Mikolaj Cygan, Martin Hrabě de Angelis, Wolfgang Wurst, Manuela Neumann, Wolfgang Enard, Thomas Misgeld, Thomas Arzberger, Dieter Edbauer
Software Mentions: 4
Published: about 6 years ago

10.1186/s13395-016-0115-5

Skeletal muscle characteristics are preserved in hTERT/cdk4 human myogenic cell lines
Cited by: 53
Author(s): Matthew Thorley, Stéphanie Duguez, Emilia Maria Cristina Mazza, Sara Valsoni, Anne Bigot, Kamel Mamchaoui, Brennan Harmon, Thomas Voït, Vincent Mouly, William Duddy
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-78983-y

Local injections of β-NGF accelerates endochondral fracture repair by promoting cartilage to bone conversion
Cited by: 13
Author(s): Kevin O. Rivera, Fabrizio Russo, Ryan M. Boileau, Ryan E. Tomlinson, Theodore Miclau, Ralph Marcucio, Tejal A. Desai, Chelsea S. Bahney
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.46566

The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop
Cited by: 29
Author(s): Merve Deniz Abdusselamoglu, Elif Eroğlu, Thomas R Burkard, Juergen A. Knoblich
Software Mentions: 4
Published: about 7 years ago

10.1080/21623945.2020.1829852

Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations
Cited by: 7
Author(s): Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-020-00945-7

Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles
Cited by: 8
Author(s): Hao‐Sen Li, Xiaowen Tang, Yu‐Hao Huang, Zhennan Xu, Meilan Chen, Xue‐Yong Du, Bo-Yuan Qiu, Pei‐Tao Chen, Wei Zhang, Adam Ślipiński, Hermes E. Escalona, Robert M. Waterhouse, Andreas Zwick
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-018-1298-1

RNA interference-based antiviral immune response against the salivary gland hypertrophy virus in Glossina pallidipes
Cited by: 9
Author(s): Irene K. Meki, Henry M. Kariithi, Andrew G. Parker, Marc J. B. Vreysen, V.I.D. Ros, Just M. Vlak, Monique M. van Oers, Adly M. M. Abd-Alla
Software Mentions: 4
Published: over 7 years ago

10.3390/v13040593

Probing into the Effects of Grapevine Leafroll-Associated Viruses on the Physiology, Fruit Quality and Gene Expression of Grapes
Cited by: 23
Author(s): Yashu Song, Robert Hanner, Bin Meng
Software Mentions: 4
Published: over 5 years ago

10.1080/21655979.2020.1864912

Analysis of Collagen type X alpha 1 (COL10A1) expression and prognostic significance in gastric cancer based on bioinformatics
Cited by: 33
Author(s): Shuai Chen, Wei Yi, Hanyang Liu, Yu Gong, Yan Zhou, Haojun Yang, Liming Tang
Software Mentions: 4
Published: over 5 years ago

10.1002/JLB.3A0617-261R

Effects of anti-inflammatory drugs on the expression of tryptophan-metabolism genes by human macrophages
Cited by: 22
Author(s): Tim Regan, Andrew C. Gill, Sara Clohisey, Mark W. Barnett, Carmine M. Pariante, Neil A. Harrison, David Hume, Edward T. Bullmore, Tom C. Freeman
Software Mentions: 4
Published: over 8 years ago

10.3390/v12080817

Host Transcriptional Response to Persistent Infection with a Live-Attenuated Porcine Reproductive and Respiratory Syndrome Virus Strain
Cited by: 6
Author(s): Jayeshbhai Chaudhari, Chia-Sin Liew, Aspen M. Workman, Jean-Jack M. Riethoven, David Steffen, Sarah Sillman, Hiep L.X. Vu
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.202943

Identification of key pathways and genes in carotid atherosclerosis through bioinformatics analysis of RNA-seq data
Cited by: 2
Author(s): Zhongchen Li, Jiheng Hao, Kun Chen, Qunlong Jiang, Peijian Wang, Xiaohui Xing, Jiyue Wang, Yinjiang Zhang, Yi Xiao, Liyong Zhang
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.101751

miRNA-mRNA crosstalk in myocardial ischemia induced by calcified aortic valve stenosis
Cited by: 12
Author(s): Chenyang Duan, Zhijun Cao, Fuqin Tang, Jian Zhao, Chunshui Liang, Hong Liu, Xiao Ye, Liangming Liu, Rong Ma
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.103859

Weighted gene coexpression network analysis identifies the key role associated with acute coronary syndrome
Cited by: 4
Author(s): Yong Wang, Miao Liu, Tao Lin, Jianhong Chen, Chuan-Meng Zhu, Ye Li, Bin Qi, Fei Liao, Rongshan Li
Software Mentions: 4
Published: almost 6 years ago

10.1080/21505594.2021.1958057

Transcriptional response of <i>Aspergillus fumigatus</i> to copper and the role of the Cu chaperones
Cited by: 6
Author(s): Duaa Anabosi, Zohar Meir, Yana Shadkchan, Mariana Handelman, Ammar Abou-Kandil, Annie Yap, Daniel Urlings, Morgan Gold, Sven Krappmann, Hubertus Haas, Nir Osherov
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.63838

Inducible mechanisms of disease tolerance provide an alternative strategy of acquired immunity to malaria
Cited by: 39
Author(s): Wiebke Nahrendorf, Alasdair Ivens, Philip J. Spence
Software Mentions: 4
Published: over 5 years ago