10.3389/fchem.2019.00519

Augmenting Basin-Hopping With Techniques From Unsupervised Machine Learning: Applications in Spectroscopy and Ion Mobility
Cited by: 16
Author(s): Chao Zhou, Christian Ieritano, W. Scott Hopkins
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12944-018-0915-1

Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue
Cited by: 19
Author(s): Guoze Wang, Kun Du, Shiyan Hu, Shiyi Chen, Xianbo Jia, Mingcheng Cai, Yu Shi, Jie Wang, Songjia Lai
Software Mentions: 4
Published: over 7 years ago

10.2196/15394

Applying Machine Learning Models with An Ensemble Approach for Accurate Real-Time Influenza Forecasting in Taiwan: Development and Validation Study
Cited by: 18
Author(s): Hao-Yuan Cheng, Yu-Chun Wu, Min-Hau Lin, Yu-Lun Liu, Yue-Yang Tsai, Jo-Hua Wu, Ke-Han Pan, Chih-Jung Ke, Chiu-Mei Chen, Liu Ding-ping, I‐Feng Lin, Jen-Hsiang Chuang
Software Mentions: 4
Published: almost 6 years ago

10.18632/aging.103454

Weighted correlation gene network analysis reveals a new stemness index-related survival model for prognostic prediction in hepatocellular carcinoma
Cited by: 14
Author(s): Qiujing Zhang, Jia Wang, Menghan Liu, Qingqing Zhu, Qiang Li, Chao Xie, Congcong Han, Yali Wang, Min Gao, Jie Liu
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.9322

Air transportation, population density and temperature predict the spread of COVID-19 in Brazil
Cited by: 82
Author(s): Pedro Aurélio Costa Lima Pequeno, Bruna Mendel, Clarissa Alves da Rosa, Mariane Bosholn, Jorge Luiz Pereira Souza, Fabrício Beggiato Baccaro, Reinaldo Imbrózio Barbosa, William E. Magnusson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0236619

Enacting national social distancing policies corresponds with dramatic reduction in COVID19 infection rates
Cited by: 101
Author(s): Daniel J. McGrail, Jianli Dai, Kathleen M. McAndrews, Raghu Kalluri
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj-cs.564

Overview of current state of research on the application of artificial intelligence techniques for COVID-19
Cited by: 35
Author(s): Vijay Kumar, Dilbag Singh, Manjit Kaur, Robertas Damaševičius
Software Mentions: 4
Published: about 5 years ago

10.1186/s12998-018-0182-2

Exploring the measurement properties of the osteopathy clinical teaching questionnaire using Rasch analysis
Cited by: 6
Author(s): Brett Vaughan
Software Mentions: 4
Published: about 8 years ago

10.3390/dj6030047

Detection of Caries Around Resin-Modified Glass Ionomer and Compomer Restorations Using Four Different Modalities In Vitro
Cited by: 4
Author(s): Tamara E. Abrams, Stephen H. Abrams, Koneswaran Sivagurunathan, Veronika Moravan, Warren Hellen, Gary I. Elman, Bennett T. Amaechi, Andreas Mandelis
Software Mentions: 4
Published: almost 8 years ago

10.1017/S1469440918003643

Persistence and gender differences in protection against severe fever with thrombocytopaenia syndrome virus with natural infection: a 4-year follow-up and mathematical prediction study
Cited by: 3
Author(s): Rui Qi, Yu Huang, Xue Jie Yu
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-34453-0

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0130622

DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications
Cited by: 54
Author(s): Yiming Lu, Wubin Qu, Guangyu Shan, Chenggang Zhang
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-018-29932-3

Poultry and beef meat as potential seedbeds for antimicrobial resistant enterotoxigenic Bacillus species: a materializing epidemiological and potential severe health hazard
Cited by: 24
Author(s): Kamelia M. Osman, Anthony D. Kappell, Ahmed Orabi, Khalid S. Almaary, Ayman Mubarak, Turki M. Dawoud, Hassan A. Hemeg, Ihab M. Moussa, Ashgan M. Hessain, Hend M. Y. Yousef, Krassimira R. Hristova
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0058804

A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes
Cited by: 7
Author(s): Yan Wang, Reda Rawi, Christoph Wilms, Dominik Heider, Rongge Yang, Daniel Hoffmann
Software Mentions: 4
Published: over 13 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: over 6 years ago

10.1186/s40814-020-00692-0

Raising Well at Home: a pre-post feasibility study of a lifestyle intervention for caregivers and their child with obesity
Cited by: 1
Author(s): Debra Haire‐Joshu, C. Schwarz, Rebekah R. Jacob, Pat Kristen, Shelly Johnston, Karyn Quinn, Rachel G. Tabak
Software Mentions: 4
Published: almost 6 years ago

10.1101/2021.03.17.435863

Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies
Cited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-37309-9

HRGPred: Prediction of herbicide resistant genes with k-mer nucleotide compositional features and support vector machine
Cited by: 8
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, K. Raghunandan, Shachi Gahoi, Nalini Kanta Choudhury, Atmakuri Ramakrishna Rao
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21176060

Sperm Proteome after Interaction with Reproductive Fluids in Porcine: From the Ejaculation to the Fertilization Site
Cited by: 12
Author(s): Chiara Luongo, Leopoldo González-Brusi, Paula Cots-Rodríguez, M. J. Izquierdo-Rico, Manuel A. Bueno Sánchez, Francisco Alberto García–Vázquez
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani11030825

Insights into the Mitochondrial and Nuclear Genome Diversity of Two High Yielding Strains of Laying Hens
Cited by: 5
Author(s): Clara Dreyling, Vera Sommerfeld, Hanna Iffland, Jörn Bennewitz, M. Rodehutscord, Martin Hasselmann
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020411

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00025

Exploring Deep Learning for Complex Trait Genomic Prediction in Polyploid Outcrossing Species
Cited by: 71
Author(s): Laura M. Zingaretti, Salvador A. Gezan, Luís Felipe Ventorim Ferrão, Luis F. Osorio, Amparo Monfort, Patricio Muñoz, Vance M. Whitaker, Miguel Pérez‐Enciso
Software Mentions: 4
Published: over 6 years ago

10.1002/1878-0261.12073

Stromal SPOCK1 supports invasive pancreatic cancer growth
Cited by: 26
Author(s): Veronique L. Veenstra, Helene Damhofer, Cynthia Waasdorp, Anne Steins, Hemant M. Kocher, Jan Paul Medema, Hanneke W. M. van Laarhoven, Maarten F. Bijlsma
Software Mentions: 4
Published: about 9 years ago

10.1007/s11302-020-09711-4

High expression levels of pyrimidine metabolic rate–limiting enzymes are adverse prognostic factors in lung adenocarcinoma: a study based on The Cancer Genome Atlas and Gene Expression Omnibus datasets
Cited by: 37
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0188568

Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits
Cited by: 22
Author(s): Jessica A. Conlan, Craig Humphrey, Andrea Severati, David S. Francis
Software Mentions: 4
Published: over 8 years ago

10.3390/s20113031

Performance of a Low-Cost Sensor Community Air Monitoring Network in Imperial County, CA
Cited by: 8
Author(s): Paul English, Heather K. Amato, Esther Bejarano, Graeme Carvlin, Humberto Lugo, Michael Jerrett, Galatea King, Daniel Madrigal, Dan Meltzer, Amanda Northcross, Luis José Imedio Olmedo, Edmund Seto, Christian Torres, A. S. Wilkie, Michelle Wong
Software Mentions: 4
Published: about 6 years ago

10.3390/ani11071959

The Effect of Feeding Management and Culling of Cows on the Lactation Curves and Milk Production of Primiparous Dairy Cows
Cited by: 4
Author(s): Jolanta Różańska-Zawieja, S. Winnicki, Joanna Zyprych-Walczak, Alicja Szabelska‐Berȩsewicz, Idzi Siatkowski, W. Nowak, Barbara Stefańska, Ryszard Kujawiak, Z. Sobek
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0206492

Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments
Cited by: 6
Author(s): Jiří Neustupa, Yvonne‬ Němcová
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2021.581430

Environmental and Anthropogenic Factors Shape Major Bacterial Community Types Across the Complex Mountain Landscape of Switzerland
Cited by: 9
Author(s): Johanna Mayerhofer, Daniel Wächter, Pierluigi Calanca, Lukas Kohli, Tobias Roth, R. G. Meuli, Franco Widmer
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6532

Ecological niche models display nonlinear relationships with abundance and demographic performance across the latitudinal distribution of <i>Astragalus utahensis</i> (Fabaceae)
Cited by: 7
Author(s): Kathryn C. Baer, John L. Maron
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.5877

Assessing the exposure of forest habitat types to projected climate change—Implications for Bavarian protected areas
Cited by: 4
Author(s): Claudia Steinacker, Carl Beierkuhnlein, Anja Jaeschke
Software Mentions: 4
Published: over 6 years ago

10.1038/s41438-021-00502-5

Strawberry sweetness and consumer preference are enhanced by specific volatile compounds
Cited by: 41
Author(s): Zhen Fan, Tomas Hasing, Timothy S. Johnson, Drake M. Garner, Michael L. Schwieterman, Christopher R. Barbey, Thomas A. Colquhoun, Charles A. Sims, M. D. V. de Resende, Vance M. Whitaker
Software Mentions: 4
Published: over 5 years ago

10.1186/s13148-021-01132-3

Methylation status of nc886 epiallele reflects periconceptional conditions and is associated with glucose metabolism through nc886 RNAs
Cited by: 10
Author(s): Saara Marttila, Leena E. Viiri, Pashupati P. Mishra, Brigitte Kühnel, Pamela R. Matías‐García, Leo-Pekka Lyytikäinen, Tiina Ceder, Nina Mononen, Wolfgang Rathmann, Juliane Winkelmann, Annette Peters, Mika Kähönen, Nina Hutri‐Kähönen, Markus Juonala, Katriina Aalto‐Setälä, Olli T. Raitakari, Terho Lehtimäki, Mélanie Waldenberger, Emma Raitoharju
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-42792-9

Extinction risks of a Mediterranean neo-endemism complex of mountain vipers triggered by climate change
Cited by: 25
Author(s): Mohsen Ahmadi, Mahmoud‐Reza Hemami, Mohammad Kaboli, Mansoureh Malekian, Niklaus E. Zimmermann
Software Mentions: 4
Published: over 7 years ago

10.3390/genes11101219

Genomic Characterization of Methicillin-Resistant Staphylococcus aureus (MRSA) by High-Throughput Sequencing in a Tertiary Care Hospital
Cited by: 8
Author(s): May Sherif Soliman, Noha Salah Soliman, Arwa R Elmanakhly, S. A. El-Banna, Ramy K. Aziz, Amani El-Kholy
Software Mentions: 4
Published: almost 6 years ago

10.1155/2020/6795392

Comparison of Variable Selection Methods for Time-to-Event Data in High-Dimensional Settings
Cited by: 3
Author(s): Julia Gilhodes, Florence Dalenc, Jocelyn Gal, Christophe Zemmour, Eve Leconte, Jean‐Marie Boher, Thomas Filleron
Software Mentions: 4
Published: about 6 years ago

10.1093/g3journal/jkaa070

Application of an optimized annotation pipeline to the <i>Cryptococcus deuterogattii</i> genome reveals dynamic primary metabolic gene clusters and genomic impact of RNAi loss
Cited by: 15
Author(s): Patrícia Aline Gröhs Ferrareze, Corinne Maufrais, Rodrigo Silva Araujo Streit, Shelby Priest, Christina A. Cuomo, Joseph Heitman, Charley Christian Staats, Guilhem Janbon
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10690

Geographic potential of the world’s largest hornet, <i>Vespa mandarinia</i> Smith (Hymenoptera: Vespidae), worldwide and particularly in North America
Cited by: 31
Author(s): Claudia Nuñez‐Penichet, Luís Osorio-Olvera, Víctor H. González, Marlon E. Cobos, Laura Jiménez, Devon A. DeRaad, Abdelghafar Alkishe, Rusby G. Contreras-Díaz, Angela Nava‐Bolaños, Kaera Utsumi, Uzma Ashraf, Adeola Adeboje, A. Townsend Peterson, Jorge Soberón
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.2748

A parasite's modification of host behavior reduces predation on its host
Cited by: 17
Author(s): John Soghigian, Linda R. Valsdottir, Todd P. Livdahl
Software Mentions: 4
Published: over 9 years ago

10.1093/gigascience/giab018

Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
Cited by: 2
Author(s): Ben Blamey, Salman Toor, Martin Dahlö, Håkan Wieslander, Philip J. Harrison, Ida‐Maria Sintorn, Alan Sabirsh, Carolina Wählby, Ola Spjuth, Andreas Hellander
Software Mentions: 4
Published: over 5 years ago

10.1186/s13002-017-0192-5

Functional diversity of home gardens and their agrobiodiversity conservation benefits in Benin, West Africa
Cited by: 32
Author(s): Rodrigue Castro Gbèdomon, Kolawolé Valère Salako, Adandé Belarmain Fandohan, Rodrigue Idohou, Romain Glèlè Kakaї, Achille Ephrem Assogbadjo
Software Mentions: 4
Published: over 8 years ago

10.1007/s00401-021-02347-7

Targeting cancer stem cells in medulloblastoma by inhibiting AMBRA1 dual function in autophagy and STAT3 signalling
Cited by: 17
Author(s): Francesca Nazio, Agnese Pò, Luana Abballe, Claudio Ballabio, Francesca Diomedi Camassei, Matteo Bordi, Antonio Camera, Simona Caruso, Ignazio Caruana, Marco Pezzullo, Caterina Ferraina, Giacomo Milletti, Matteo Gianesello, Sofia Reddel, Luca Compagnucci, Donatella Ceglie, Sara Marinelli, Silvia Campello, Elena Papaleo, Evelina Miele, Antonella Cacchione, Andrea Carai, Maria Vinci, Enrico Velardi, Biagio De Angelis, Luca Tiberi, Concetta Quintarelli, Angela Mastronuzzi, Elisabetta Ferretti, Franco Locatelli, Francesco Cecconi
Software Mentions: 4
Published: about 5 years ago

10.1016/j.mex.2021.101384

An improved method for efficient recovery of high quality DNA from date palm (Phoenix dactylifera L; Arecaceae)
Cited by: 5
Author(s): M. I. S. Safeena, Y. Dissanayake, Mohamed Cassim Mohamed Zakeel, Lakshan Warnakula, Ruwini Cooray, D.A.R.K. Dayarathna
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-014-0254-y

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
Cited by: 77
Author(s): Dharani Dhar Burra, Oliver Berkowitz, Pete E. Hedley, Jenny Morris, Svante Resjö, Fredrik Levander, Erland Liljeroth, Erik Andréasson, Erik Alexandersson
Software Mentions: 4
Published: almost 12 years ago

10.1186/s13100-019-0174-3

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
Cited by: 10
Author(s): Tarmo Puurand, Viktoria Kukuškina, Fanny-Dhelia Pajuste, Maido Remm
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pgen.1005755

Preferential Allele Expression Analysis Identifies Shared Germline and Somatic Driver Genes in Advanced Ovarian Cancer
Cited by: 12
Author(s): Najeeb Halabi, Alejandra Martinez, Halema Al-Farsi, Eliane Mery-Lamarche, Laurence Puydenus, Pascal Pujol, Hanif Khalak, Cameron Mclurcan, Gwénaël Ferron, Denis Querleu, Iman K. Al-Azwani, Eman K. Al-Dous, Yasmin Ali Mohamoud, Joel A. Malek, Arash Rafii
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1008761

Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network
Cited by: 13
Author(s): Laura Natalia Balarezo-Cisneros, Steven J. Parker, Marcin G. Fraczek, Soukaina Timouma, Ping Wang, Raymond T. O’Keefe, Catherine B. Millar, Daniela Delneri
Software Mentions: 4
Published: over 5 years ago

10.1111/gcb.14644

A critical review of the impacts of cover crops on nitrogen leaching, net greenhouse gas balance and crop productivity
Cited by: 296
Author(s): Mohamed Abdalla, Astley Hastings, Kun Cheng, Qian Ye, D. R. Chadwick, Mikk Espenberg, Jaak Truu, Robert M. Rees, Pete Smith
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-017-04806-2

Response of Atlantic salmon Salmo salar to temperature and dissolved oxygen extremes established using animal-borne environmental sensors
Cited by: 85
Author(s): Kilian M. Stehfest, Chris Carter, Jaime D. McAllister, D. J. Ross, Jayson M. Semmens
Software Mentions: 4
Published: about 9 years ago

10.1186/s12984-021-00820-8

Brain–computer interface robotics for hand rehabilitation after stroke: a systematic review
Cited by: 76
Author(s): Paul Dominick E. Baniqued, Emily C. Stanyer, Muhammad Awais, Ali Alazmani, Andrew Jackson, Mark Mon-Williams, Faisal Mushtaq, R. Glynn Holt
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2021.736499

Effects of the COVID-19 Health Crisis on Sports Practice, Life Quality, and Emotional Status in Spanish High-Performance Athletes
Cited by: 9
Author(s): Elena Conde, Luis Manuel Martínez-Aranda, Gema Calleja Sanz, Cristina López de Subijana, Antonio Sánchez Pato, Álvaro Díaz-Aroca, Alejandro Leiva-Arcas, Juan Alfonso García-Roca, Yago Ramis, Miquel Torregrossa
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.4559

Table for five, please: Dietary partitioning in boreal bats
Cited by: 62
Author(s): Eero J. Vesterinen, Anna I. E. Puisto, Anna Blomberg, Thomas M. Lilley
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2021.626301

Seed Priming With Protein Hydrolysates Improves Arabidopsis Growth and Stress Tolerance to Abiotic Stresses
Cited by: 25
Author(s): Mirella Sorrentino, Nuria De Diego, Lydia Ugena, Lukáš Spíchal, Luigi Lucini, Begoña Miras-Moreno, Leilei Zhang, Youssef Rouphael, G. Colla, Klára Panzarová
Software Mentions: 4
Published: about 5 years ago

10.1111/1365-2435.13028

Habitat heterogeneity induces rapid changes in the feeding behaviour of generalist arthropod predators
Cited by: 42
Author(s): Karin Staudacher, Oskar Rennstam Rubbmark, Klaus Birkhofer, Gerard Malsher, Daniela Sint, Mattias Jonsson, Michael Traugott
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2018.01526

Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains
Cited by: 32
Author(s): Evdokia Syranidou, Sofie Thijs, Marina Avramidou, Nele Weyens, Danae Venieri, Isabel Pintelon, Jaco Vangronsveld, Nicolas Kalogerakis
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2020.607213

Genome-Wide Association Study Reveals Candidate Genes Involved in Fruit Trait Variation in Persian Walnut (Juglans regia L.)
Cited by: 8
Author(s): Anthony Bernard, Julie Crabier, Armel Donkpegan, Annarita Marrano, Fabrice Lheureux, Elisabeth Dirlewanger
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.627432

Drivers of Natural Variation in Water-Use Efficiency Under Fluctuating Light Are Promising Targets for Improvement in Sorghum
Cited by: 21
Author(s): Charles P. Pignon, Andrew D. B. Leakey, Stephen P. Long, Johannes Kromdijk
Software Mentions: 4
Published: over 5 years ago

10.5888/pcd18.210143

Disparities in Internet Access and COVID-19 Vaccination in New York City
Cited by: 8
Author(s): Isaac H. Michaels, Sylvia Pirani, Alvaro Carrascal
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2021.619634

Comparative Metabolite and Gene Expression Analyses in Combination With Gene Characterization Revealed the Patterns of Flavonoid Accumulation During Cistus creticus subsp. creticus Fruit Development
Cited by: 6
Author(s): Neda Aničić, Efstathia Patelou, Antigoni Papanikolaou, Anthi Kanioura, Camilla Valdesturli, Panagiotis Arapitsas, Marijana Škorić, Milan Dragićević, Uroš Gašić, Αθανάσιος Κουκουνάρας, Stefanos Kostas, Eirini Sarrou, Stefan Martens, Danijela Mišić, Angelos K. Kanellis
Software Mentions: 4
Published: over 5 years ago

10.1186/s12943-015-0358-5

Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer
Cited by: 198
Author(s): Sören Müller, Susanne Raulefs, Philipp Bruns, Fabian Afonso-Grunz, Anne Plötner, Rolf Thermann, Carsten Jäger, Anna Melissa Schlitter, Bo Kong, Ivonne Regel, W. Kurt Roth, Björn Rotter, Klaus Hoffmeier, Günter Kahl, Ina Koch, Fabian J. Theis, Jörg Kleeff, Peter Winter, Christoph Michalski
Software Mentions: 4
Published: over 11 years ago

10.1093/jxb/erx032

Oscillatory signatures underlie growth regimes in Arabidopsis pollen tubes: computational methods to estimate tip location, periodicity, and synchronization in growing cells
Cited by: 43
Author(s): Daniel Santa Cruz Damineli, Maria Teresa Portes, José A. Feijó
Software Mentions: 4
Published: over 9 years ago

10.3389/fpls.2020.620832

Microcutting Redox Profile and Anatomy in Eucalyptus spp. With Distinct Adventitious Rooting Competence
Cited by: 9
Author(s): Johnatan Vilasboa, Cibele Tesser da Costa, Leonardo Girardi Ransan, Jorge Ernesto de Araújo Mariath, Arthur Germano Fett-Neto
Software Mentions: 4
Published: over 5 years ago

10.3390/s20174940

Application of Convolutional Neural Network-Based Feature Extraction and Data Fusion for Geographical Origin Identification of Radix Astragali by Visible/Short-Wave Near-Infrared and Near Infrared Hyperspectral Imaging
Cited by: 19
Author(s): Qinlin Xiao, Xiulin Bai, Pan Gao, Yong He
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-92387-6

ACSAuto-semi-automatic assessment of human vastus lateralis and rectus femoris cross-sectional area in ultrasound images
Cited by: 7
Author(s): Paul Ritsche, Philipp Wirth, Martino V. Franchi, Oliver Faude
Software Mentions: 4
Published: about 5 years ago

10.3390/biom11091303

Determination of Butyrate Synthesis Capacity in Gut Microbiota: Quantification of but Gene Abundance by qPCR in Fecal Samples
Cited by: 5
Author(s): Nikola Ďásková, Marie Heczková, István Módos, Petra Vídeňská, Petra Šplíchalová, Helena Pelantová, Marek Kuzma, Jan Gojda, Monika Cahová
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12968-019-0554-3

mDixon ECG-gated 3-dimensional cardiovascular magnetic resonance angiography in patients with congenital cardiovascular disease
Cited by: 20
Author(s): Soultana Kourtidou, Marty R Jones, Ryan Moore, Justin T. Tretter, Nicholas J. Ollberding, Eric J. Crotty, Mantosh S. Rattan, Robert Fleck, Michael D. Taylor
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-021-07409-4

Impact of PNPase on the transcriptome of Rhodobacter sphaeroides and its cooperation with RNase III and RNase E
Cited by: 7
Author(s): Daniel-Timon Spanka, Carina M. Reuscher, Gabriele Klug
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-018-0539-8

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
Cited by: 31
Author(s): Jessica K. Jarett, Stephen Nayfach, Mircea Podar, William P. Inskeep, Natalia Ivanova, Jacob Munson-McGee, Frederik Schulz, Mark Young, Zackary J. Jay, Jacob P. Beam, Nikos C. Kyrpides, Rex R. Malmstrom, Ramunas Stepanauskas, Tanja Woyke
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2020.594569

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks
Cited by: 6
Author(s): Isaiah Catalino M. Pabuayon, Ai Kitazumi, Glenn B. Gregorio, Rakesh Kumar Singh, Benildo G. de los Reyes
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-89897-8

Virtual splint registration for electromagnetic and optical navigation in orbital and craniofacial surgery
Cited by: 1
Author(s): Ruud Schreurs, Frank Baan, Cornelis Klop, L. Dubois, Ludo F. M. Beenen, Petra E.M.H. Habets, A.G. Becking, T.J.J. Maal
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.3858

Learning performance and brain structure of artificially-reared honey bees fed with different quantities of food
Cited by: 15
Author(s): Karin Steijven, Johannes Spaethe, Ingolf Steffan‐Dewenter, Stephan Härtel
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0256091

Identification of loci associated with susceptibility to Mycobacterium avium subsp. paratuberculosis infection in Holstein cattle using combinations of diagnostic tests and imputed whole-genome sequence data
Cited by: 12
Author(s): María Canive, Óscar González-Recio, Almudena Fernández, Patricia Vázquez, Gerard Badia-Bringué, José Luis Lavín, Joseba M. Garrido, Ramón A. Juste, Marta Alonso‐Hearn
Software Mentions: 4
Published: almost 5 years ago

10.1186/1868-7083-4-20

Genome-scale case-control analysis of CD4+ T-cell DNA methylation in juvenile idiopathic arthritis reveals potential targets involved in disease
Cited by: 41
Author(s): Justine A. Ellis, Jane Munro, Raul A Chavez, Lavinia Gordon, Jihoon E. Joo, Jonathan Akikusa, Roger C. Allen, Anne‐Louise Ponsonby, Jeffrey M Craig, Richard Saffery
Software Mentions: 4
Published: over 13 years ago

10.1186/s12879-017-2837-3

Acquisition and persistence of strain-specific methicillin-resistant Staphylococcus aureus and their determinants in community nursing homes
Cited by: 3
Author(s): Nataliya G. Batina, Christopher Crnich, Dorte Döpfer
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-22236-6

Support for viral persistence in bats from age-specific serology and models of maternal immunity
Cited by: 35
Author(s): Alison J. Peel, Kate S. Baker, David T. S. Hayman, Christopher C. Broder, Andrew A. Cunningham, Anthony R. Fooks, Romain Garnier, James Wood, Olivier Restif
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pmed.1003111

Preoperative risk stratification in endometrial cancer (ENDORISK) by a Bayesian network model: A development and validation study
Cited by: 22
Author(s): Casper Reijnen, Evangelia Gogou, Nicole C.M. Visser, Hilde Engerud, Jordache Ramjith, Louis J.M. van der Putten, Koen K. Van de Vijver, Marı́a Santacana, Peter Bronsert, Johan Bulten, Marc Hirschfeld, Eva Colás, Antonio Gil‐Moreno, Armando Reques, Gemma Mancebo, Camilla Krakstad, Jone Trovik, Ingfrid Salvesen Haldorsen, Jutta Huvila, Martin Koskas, Vít Weinberger, Markéta Bednaříková, Jitka Hausnerová, A.A.M. van der Wurff, Xavier Matías‐Guiu, Frédéric Amant, Leon F.A.G. Massuger, Marc P.L.M. Snijders, Heidi V.N. Küsters‐Vandevelde, Peter Lucas, Johanna M.A. Pijnenborg
Software Mentions: 4
Published: about 6 years ago

10.1038/s42003-021-01840-9

Overcoming barriers to the registration of new plant varieties under the DUS system
Cited by: 9
Author(s): Chin Jian Yang, Joanne Russell, Luke Ramsay, William Thomas, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0211546

Factors influencing sedentary behaviour: A system based analysis using Bayesian networks within DEDIPAC
Cited by: 23
Author(s): Christoph Buck, Anne Loyen, Ronja Foraita, Jelle Van Cauwenberg, Marieke De Craemer, Ciarán MacDonncha, Jean‐Michel Oppert, Johannes Brug, Nanna Lien, Greet Cardon, Iris Pigeot, Sébastien Chastin
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0217036

Reclassification of breast cancer: Towards improved diagnosis and outcome
Cited by: 3
Author(s): Alexander Landry, Zsolt Zádor, Rizwan Ul Haq, Michael D. Cusimano
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0250787

A dynamic Bayesian network model for predicting organ failure associations without predefining outcomes
Cited by: 2
Author(s): R. A. De Blasi, Giuseppe Campagna, Stefano Finazzi
Software Mentions: 4
Published: over 5 years ago

10.1186/s12711-020-0530-2

SeqBreed: a python tool to evaluate genomic prediction in complex scenarios
Cited by: 7
Author(s): Miguel Pérez‐Enciso, Lino C. Ramírez-Ayala, Laura M. Zingaretti
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2019.01196

High-Dimensional Bayesian Network Inference From Systems Genetics Data Using Genetic Node Ordering
Cited by: 13
Author(s): Lingfei Wang, Pieter Audenaert, Tom Michoel
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-46737-0

Dynamic Bayesian network in infectious diseases surveillance: a simulation study
Cited by: 8
Author(s): Tao Zhang, Yue Ma, Xiong Xiao, Yun Lin, Xingyu Zhang, Fei Yin, Xiaosong Li
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-94628-0

Disentangling the syntrophic electron transfer mechanisms of Candidatus geobacter eutrophica through electrochemical stimulation and machine learning
Cited by: 5
Author(s): Heyang Yuan, Xuehao Wang, Tzu-Yu Lin, Jinha Kim, Wen Tso Liu
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0148974

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism
Cited by: 23
Author(s): Chris A. Kieslich, Phanourios Tamamis, Yannis A. Guzman, Melis Onel, Christodoulos A. Floudas
Software Mentions: 4
Published: over 10 years ago

10.1093/ons/opx163

Multivariable and Bayesian Network Analysis of Outcome Predictors in Acute Aneurysmal Subarachnoid Hemorrhage: Review of a Pure Surgical Series in the Post-International Subarachnoid Aneurysm Trial Era
Cited by: 10
Author(s): Zsolt Zádor, Wei Huang, Matthew Sperrin, Michael T. Lawton
Software Mentions: 4
Published: almost 9 years ago

10.3390/membranes11020100

Prediction of the Long-Term Effect of Iron on Methane Yield in an Anaerobic Membrane Bioreactor Using Bayesian Network Meta-Analysis
Cited by: 1
Author(s): Dawei Yu, Yushuai Liang, Rathmalgodage Thejani Nilusha, Tharindu Ritigala, Yuansong Wei
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-40403-1

A multimodal approach to cardiovascular risk stratification in patients with type 2 diabetes incorporating retinal, genomic and clinical features
Cited by: 19
Author(s): Ahmed E. Fetit, Alex S.F. Doney, Stephen Hogg, Ruixuan Wang, Tom MacGillivray, Joanna M. Wardlaw, Fergus Doubal, Gareth J. McKay, Stephen J. McKenna, Emanuele Trucco
Software Mentions: 4
Published: over 7 years ago

10.3390/nu8120747

Effects of Hazelnut Consumption on Blood Lipids and Body Weight: A Systematic Review and Bayesian Meta-Analysis
Cited by: 41
Author(s): Simone Perna, Attilio Giacosa, Gianluca Bonitta, Chiara Bologna, Antonio Isu, Davide Guido, Mariangela Rondanelli
Software Mentions: 4
Published: over 9 years ago

10.18632/aging.202686

An immunoscore nomogram for predicting survival in patients with oesophageal cancer
Cited by: 0
Author(s): Gaoming Li, Qifan Song, Angsong Cai, Zeliang Wei, Rui Zhang, Dali Yi, Jia Chen, Fang Li, Yanqi Zhang, Ling Liu, Yazhou Wu, Dong Yi
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.104119

Vascular endothelial growth factor receptor-2 and its association with tumor immune regulatory gene expression in hepatocellular carcinoma
Cited by: 5
Author(s): Ze-Long Liu, Lingling Zhu, Jinghua Liu, Zhaoxia Pu, Zhiping Ruan, Chen Jiang
Software Mentions: 4
Published: over 5 years ago

10.3897/BDJ.5.e10792

Arthropod and oligochaete assemblages from grasslands of the southern Kenai Peninsula, Alaska
Cited by: 10
Author(s): Matthew L. Bowser, John M. Morton, John D. Hanson, Dawn R. Magness, Mallory Okuly
Software Mentions: 4
Published: over 9 years ago

10.26508/lsa.201800283

Expanding the repertoire of glucocorticoid receptor target genes by engineering genomic response elements
Cited by: 13
Author(s): Verena Thormann, Laura V. Glaser, Maika C. Rothkegel, Marina Borschiwer, Melissa Bothe, Alisa Fuchs, Sebastiaan H. Meijsing
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102824

Profiles of immune cell infiltration and immune-related genes in the tumor microenvironment of osteosarcoma
Cited by: 103
Author(s): Chi Zhang, Jinghui Zheng, Zong-Han Lin, Haoyuan Lv, Zhuo-Miao Ye, Yueping Chen, Xiaoyun Zhang
Software Mentions: 4
Published: over 6 years ago

10.26508/lsa.202000809

Reduced RNA turnover as a driver of cellular senescence
Cited by: 9
Author(s): Nowsheen Mullani, Yevheniia Porozhan, Adèle Mangelinck, Christophe Rachez, Mickaël Costallat, Éric Batsché, Michèle Goodhardt, Giovanni Cenci, Carl Mann, Christian Muchardt
Software Mentions: 4
Published: over 5 years ago

10.1186/1752-0509-7-135

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Cited by: 134
Author(s): Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolás Rodríguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan Kowal, Benjamin Wicks, Emanuel Gonçalvès, Julien Dorier, Michel Le Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xénarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Sáez-Rodríguez, Tomáš Helikar
Software Mentions: 4
Published: over 13 years ago

10.1128/mSystems.00162-20

Soil Carbon, Nitrogen, and Phosphorus Cycling Microbial Populations and Their Resistance to Global Change Depend on Soil C:N:P Stoichiometry
Cited by: 75
Author(s): Gongwen Luo, Cong Xue, Qianhong Jiang, Yan Xiao, Fengge Zhang, Shiwei Guo, Qirong Shen
Software Mentions: 4
Published: about 6 years ago

10.1186/s12888-021-03445-2

Network analysis of the relationship between negative life events and depressive symptoms in the left-behind children
Cited by: 12
Author(s): Kuiliang Li, Guang Yu, Lei Ren, Xiaowei Zhan, Xuejiao Tan, Xi Luo, Zhanchun Feng
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12889-021-11553-7

The individual, place, and wellbeing – a network analysis
Cited by: 7
Author(s): Eoin McElroy, M. Ashton, A Bagnall, Terence Comerford, Michael McKeown, Praveetha Patalay, Andy Pennington, Jane South, Timothy L. Wilson, Rhiannon Corcoran
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13045-020-00908-z

The global burden and attributable risk factor analysis of acute myeloid leukemia in 195 countries and territories from 1990 to 2017: estimates based on the global burden of disease study 2017
Cited by: 102
Author(s): Ming Yi, An‐Ping Li, Linghui Zhou, Qian Chu, Yongping Song, Kongming Wu
Software Mentions: 4
Published: about 6 years ago