10.1038/s41421-021-00271-4

Single-cell analysis of pancreatic ductal adenocarcinoma identifies a novel fibroblast subtype associated with poor prognosis but better immunotherapy response
Cited by: 90
Author(s): Yu Wang, Yongfeng Liang, Haiyan Xu, Xiao Zhang, Tiebo Mao, Jiujie Cui, Jiyong Yao, Yongchao Wang, Feng Jiao, Xiuying Xiao, Jiong Hu, Qing Xia, Xiaofei Zhang, Xujun Wang, Yongwei Sun, Deliang Fu, Lei Shen, Ximing Xu, Jing Xue, Liwei Wang
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-48916-5

An epigenome-wide analysis of cord blood DNA methylation reveals sex-specific effect of exposure to bisphenol A
Cited by: 25
Author(s): Ryuichi Miura, Atsuko Araki, Machiko Minatoya, Kunio Miyake, Mei Lien Chen, Sumitaka Kobayashi, Chihiro Miyashita, Jun Yamamoto, Tomohiro Matsumura, Mayumi Ishizuka, Takeo Kubota, Reiko Kishi
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-015-1635-9

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
Cited by: 72
Author(s): James E. Koltes, Eric R. Fritz-Waters, Christopher J. Eisley, Igseo Choi, Hua Bao, Arun Kommadath, Nick V. L. Serão, Nicholas Boddicker, Samuel M. Abrams, Martine Schroyen, Hyelee Loyd, Christopher K. Tuggle, Graham Plastow, Leluo Guan, Paul Stothard, Joan K. Lunney, Peng Liu, Susan Carpenter, Raymond R. R. Rowland, Jack C. M. Dekkers, James M. Reecy
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-019-43881-5

Comprehensive and Systematic Analysis of Gene Expression Patterns Associated with Body Mass Index
Cited by: 13
Author(s): Paule V. Joseph, Rosario B. Jaime-Lara, Yupeng Wang, Lichen Xiang, Wendy A. Henderson
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-81507-x

Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: over 5 years ago

10.1186/s12916-019-1340-7

Performance of the Framingham risk models and pooled cohort equations for predicting 10-year risk of cardiovascular disease: a systematic review and meta-analysis
Cited by: 113
Author(s): Johanna A A Damen, Romin Pajouheshnia, Pauline Heus, Karel G.M. Moons, Johannes B. Reitsma, R. J. P. M. Scholten, Lotty Hooft, Thomas P A Debray
Software Mentions: 4
Published: about 7 years ago

10.1186/s12874-019-0769-x

Ranking hospital performance based on individual indicators: can we increase reliability by creating composite indicators?
Cited by: 14
Author(s): Peter C. Austin, Iris Ceyisakar, Ewout W. Steyerberg, Hester F. Lingsma, Perla J Marang-van de Mheen
Software Mentions: 4
Published: about 7 years ago

10.1186/s12866-021-02306-y

Spatio-temporal dynamics of bacterial communities in the shoreline of Laurentian great Lake Erie and Lake St. Clair’s large freshwater ecosystems
Cited by: 2
Author(s): Abdolrazagh Hashemi Shahraki, Subba Rao Chaganti, Daniel D. Heath
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2018.00108

Experimental Considerations for Single-Cell RNA Sequencing Approaches
Cited by: 125
Author(s): Quy Nguyen, Nicholas Pervolarakis, Kevin Nee, Kai Kessenbrock
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0149973

Evaluating and Quantifying User and Carer Involvement in Mental Health Care Planning (EQUIP): Co-Development of a New Patient-Reported Outcome Measure
Cited by: 20
Author(s): Penny Bee, Chris Gibbons, Patrick Callaghan, Claire Fraser, Karina Lovell
Software Mentions: 4
Published: over 10 years ago

10.3389/fpls.2021.630243

Identification of Key Gene Networks Associated With Cell Wall Components Leading to Flesh Firmness in Watermelon
Cited by: 11
Author(s): Muhammad Anees, Lei Gao, Muhammad Umer, Pingli Yuan, Huiling Zhu, Xingrong Lu, Nan He, Chengsheng Gong, Mohamed Omar Kaseb, Shengjie Zhao, Wenge Liu
Software Mentions: 4
Published: about 5 years ago

10.1242/bio.039461

Acclimation temperature changes spermatozoa flagella length relative to head size in brown trout
Cited by: 2
Author(s): Miriam Fenkes, John L. Fitzpatrick, Holly A. Shiels, Robert L. Nudds
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giz067

Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
Cited by: 52
Author(s): Changming Bai, Lusheng Xin, Umberto Rosani, Biao Wu, Qingchen Wang, Xiaoke Duan, Zhihong Liu, Wang Chongming
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.116.032805

Assessing the Gene Content of the Megagenome: Sugar Pine (<i>Pinus lambertiana</i>)
Cited by: 45
Author(s): Daniel González-Ibeas, Pedro Manuel Martínez-García, Randi Famula, Annette Delfino-Mix, Kristian Stevens, Carol A. Loopstra, Charles H. Langley, David B. Neale, Jill L. Wegrzyn
Software Mentions: 4
Published: over 9 years ago

10.3390/cancers12092433

Oncogenic Orphan Nuclear Receptor NR4A3 Interacts and Cooperates with MYB in Acinic Cell Carcinoma
Cited by: 11
Author(s): David Y. Lee, Kathryn J. Brayer, Yoshitsugu Mitani, Eric A Burns, Pulivarthi H. Rao, Diana Bell, Michelle D. Williams, Renata Ferrarotto, Kristen B. Pytynia, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 4
Published: almost 6 years ago

10.3390/cells8091092

Expression of FGF8, FGF18, and FGFR4 in Gastroesophageal Adenocarcinomas
Cited by: 13
Author(s): Gerd Jomrich, Xenia Hudec, Felix Harpain, Daniel Winkler, Gerald Timelthaler, Thomas Mohr, Brigitte Marian, Sebastian F. Schoppmann
Software Mentions: 4
Published: almost 7 years ago

10.1172/jci.insight.147413

COVID-19 and RA share an SPP1 myeloid pathway that drives PD-L1+ neutrophils and CD14+ monocytes
Cited by: 23
Author(s): Lucy MacDonald, Stefano Alivernini, Barbara Tolusso, Aziza Elmesmari, Domenico Somma, Simone Perniola, Annamaria Paglionico, Luca Petricca, Silvia Laura Bosello, Angelo Carfì, Michela Sali, Egidio Stigliano, Antonella Cingolani, Rita Murri, Vincenzo Arena, Massimo Fantoni, Massimo Antonelli, Francesco Landi, Francesco Franceschi, Maurizio Sanguinetti, Iain B. McInnes, Charles McSharry, Antonio Gasbarrini, Thomas D. Otto, Mariola Kurowska‐Stolarska, Stefano Alivernini
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1000846

SREB, a GATA Transcription Factor That Directs Disparate Fates in Blastomyces dermatitidis Including Morphogenesis and Siderophore Biosynthesis
Cited by: 57
Author(s): Gregory M. Gauthier, Thomas D. Sullivan, Sergio S. Gallardo, T. Tristan Brandhorst, Amber J. Vanden Wymelenberg, Christina A. Cuomo, Garret Suen, Cameron R. Currie, Bruce S. Klein
Software Mentions: 4
Published: over 16 years ago

10.7554/eLife.43882

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury
Cited by: 349
Author(s): Nona Farbehi, Ralph Patrick, Aude Dorison, Munira Xaymardan, Vaibhao Janbandhu, Katharina Wystub-Lis, Joshua W. K. Ho, Robert E. Nordon, Richard P. Harvey
Software Mentions: 4
Published: over 7 years ago

10.3389/fpubh.2020.00455

Extensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages
Cited by: 1
Author(s): Alexander C. Outhred, Ulziijargal Gurjav, Peter Jelfs, Nadine McCallum, Qinning Wang, Grant A. Hill-Cawthorne, Ben J. Marais, Vitali Sintchenko
Software Mentions: 4
Published: almost 6 years ago

10.3389/fninf.2015.00012

Reproducibility of neuroimaging analyses across operating systems
Cited by: 87
Author(s): Tristan Glatard, Lindsay B. Lewis, Rafael Ferreira da Silva, Reza Adalat, Natacha Beck, Claude Lepage, Pierre Rioux, Marc-Étienne Rousseau, Tarek Sherif, Ewa Deelman, Najmeh Khalili-Mahani, Alan C. Evans
Software Mentions: 4
Published: over 11 years ago

10.1186/s12936-018-2457-4

Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour
Cited by: 9
Author(s): Antoine M. G. Barreaux, N'Guessan Brou, Alphonsine A. Koffi, Raphaël N’Guessan, Welbeck A. Oumbouke, Innocent Z. Tia, Matthew B. Thomas
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12870-020-02676-x

Genome-wide association studies and whole-genome prediction reveal the genetic architecture of KRN in maize
Cited by: 11
Author(s): Yixin An, Lin Chen, Yongxiang Li, Chunhui Li, Yunsu Shi, Dengfeng Zhang, Li Yu, Tianyu Wang
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-31371-z

Genome-wide analysis of the FleQ direct regulon in Pseudomonas fluorescens F113 and Pseudomonas putida KT2440
Cited by: 37
Author(s): Esther Blanco-Romero, Miguel Redondo‐Nieto, Francisco Martínez‐Granero, Daniel Garrido‐Sanz, Marı́a Isabel Ramos-González, Marta Martín, Rafael Rivilla
Software Mentions: 4
Published: almost 8 years ago

10.1186/1475-2875-11-309

Effects of malaria volunteer training on coverage and timeliness of diagnosis: a cluster randomized controlled trial in Myanmar
Cited by: 23
Author(s): Ohnmar Ohnmar, Tun-Min, San-Shwe, Than-Win, Virasakdi Chongsuvivatwong
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.ppat.1009665

Single-cell RNA-seq landscape midbrain cell responses to red spotted grouper nervous necrosis virus infection
Cited by: 17
Author(s): Qing Wang, Cheng Yuan Peng, Min Yang, Fengqi Huang, Xuzhuo Duan, Shaowen Wang, Huitao Cheng, Huirong Yang, Haifeng Zhao, Qiwei Qin
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-74598-5

Expression of SARS-CoV-2 entry factors in lung epithelial stem cells and its potential implications for COVID-19
Cited by: 36
Author(s): Anna A. Valyaeva, Anastasia A. Zharikova, Artem S. Kasianov, Yegor S. Vassetzky, Eugene V. Sheval
Software Mentions: 4
Published: almost 6 years ago

10.1089/ast.2018.1870

A Low-Diversity Microbiota Inhabits Extreme Terrestrial Basaltic Terrains and Their Fumaroles: Implications for the Exploration of Mars
Cited by: 18
Author(s): Charles S. Cockell, Jesse Patrick Harrison, Adam H. Stevens, Samuel J. Payler, S. S. Hughes, S. E. Kobs Nawotniak, A. L. Brady, R. C. Elphic, C. W. Haberle, A. Sehlke, K. Beaton, Andrew F. J. Abercromby, Petra Schwendner, Jennifer Wadsworth, Hanna Landenmark, Rosie Cane, Andrew W. Dickinson, Natasha Nicholson, Liam Perera, D. S. S. Lim
Software Mentions: 4
Published: over 7 years ago

10.1111/1751-7915.12337

Dynamic changes in microbiota and mycobiota during spontaneous ‘<scp>V</scp>ino <scp>S</scp>anto <scp>T</scp>rentino’ fermentation
Cited by: 41
Author(s): Irene Stefanini, Davide Albanese, A. Cavazza, Elena Franciosi, Carlotta De Filippo, Claudio Donati, Duccio Cavalieri
Software Mentions: 4
Published: over 10 years ago

10.1098/rstb.2019.0815

The role of human and mosquito behaviour in the efficacy of a house-based intervention
Cited by: 7
Author(s): Antoine M. G. Barreaux, Welbeck A. Oumbouke, N'Guessan Brou, Innocent Z. Tia, Ludovic P. Ahoua Alou, Dimi Théodore Doudou, Alphonsine A. Koffi, Raphaël N’Guessan, Eleanore D. Sternberg, Matthew B. Thomas
Software Mentions: 4
Published: over 5 years ago

10.1016/j.watres.2019.06.075

Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters
Cited by: 93
Author(s): Marcos Quintela-Baluja, Mohamed Abouelnaga, Jesús L. Romalde, Jian‐Qiang Su, Yongjie Yu, Mariano Gomez-Lopez, Barth F. Smets, Yong‐Guan Zhu, David W. Graham
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.7552

Oceanographic habitat and the coral microbiomes of urban-impacted reefs
Cited by: 4
Author(s): Stephanie M. Rosales, Christopher D. Sinigalliano, Maribeth L. Gidley, Paul R. Jones, Lewis J. Gramer
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0231238

Metabolic versatility of freshwater sedimentary archaea feeding on different organic carbon sources
Cited by: 5
Author(s): Sergi Compte-Port, Mireia Fillol, Frédéric Gich, Carles M. Borrego
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.1457

Academic inequality through the lens of community ecology: a meta-analysis
Cited by: 9
Author(s): Akira Mori, Shenhua Qian, Shinichi Tatsumi
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0194768

Data sharing in PLOS ONE: An analysis of Data Availability Statements
Cited by: 110
Author(s): Lisa Federer, Chris Belter, Douglas Joubert, Alicia A. Livinski, Ya-Ling Lu, Lissa N. Snyders, Holly Thompson
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pntd.0007067

DNA plasmid coding for Phlebotomus sergenti salivary protein PsSP9, a member of the SP15 family of proteins, protects against Leishmania tropica
Cited by: 14
Author(s): Elham Gholami, Fabiano Oliveira, Tahereh Taheri, Negar Seyed, Safoora Gharibzadeh, Nasim Gholami, Amir Mizbani, Fatemeh Zali, Sima Habibzadeh, Daniel Omid Bakhadj, Claudio Meneses, Kambiz Kamyab‐Hesari, Alireza Sadeghipour, Yasaman Taslimi, Fatemeh Khadir, Shaden Kamhawi, Mohammad Ali Mazlomi, Jesús G. Valenzuela, Sima Rafati
Software Mentions: 4
Published: over 7 years ago

10.34133/2020/5839856

“Macrobot”: An Automated Segmentation-Based System for Powdery Mildew Disease Quantification
Cited by: 15
Author(s): Stefanie Lück, Marc Strickert, Maximilian Lorbeer, Friedrich Melchert, Andreas Backhaus, David Kilias, Udo Seiffert, Dimitar Douchkov
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0225252

I’ve been robbed! – Can changes in floral traits discourage bee pollination?
Cited by: 2
Author(s): Camila Vaz de Souza, Maíra Vidor Salvador, Priscila Tunes, Luiz Cláudio Di Stasi, Elza Guimarães
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0024982

SNPpy - Database Management for SNP Data from Genome Wide Association Studies
Cited by: 10
Author(s): Faheem Mitha, Herodotos Herodotou, Nedyalko Borisov, Chen Jiang, Josh Yoder, Kouros Owzar
Software Mentions: 4
Published: almost 15 years ago

10.3389/fmicb.2015.00891

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland
Cited by: 85
Author(s): Rebecca C. Mueller, Jayne Belnap, Cheryl R. Kuske
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2017.01979

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy
Cited by: 177
Author(s): Carlotta De Filippo, Monica Di Paola, Matteo Ramazzotti, Davide Albanese, Giuseppe Pieraccini, Elena Banci, Franco Miglietta, Duccio Cavalieri, Paolo Lionetti
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0233889

Protected and un-protected urban wetlands have similar aquatic macroinvertebrate communities: A case study from the Cape Flats Sand Fynbos region of southern Africa
Cited by: 5
Author(s): Michelle Blanckenberg, Musa C. Mlambo, D. Stott Parker, Samuel N. Motitsoe, Cecile Reed
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0185207

Escape Excel: A tool for preventing gene symbol and accession conversion errors
Cited by: 8
Author(s): Eric A. Welsh, Paul A. Stewart, Brent M. Kuenzi, James A. Eschrich
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-86720-2

Climate change and anthropogenic food manipulation interact in shifting the distribution of a large herbivore at its altitudinal range limit
Cited by: 8
Author(s): Julius G. Bright Ross, Wibke Peters, Federico Ossi, P. R. Moorcroft, E. Cordano, E. Eccel, Filippo Bianchini, Maurizio Ramanzin, Francesca Cagnacci
Software Mentions: 4
Published: over 5 years ago

10.5116/ijme.5740.4262

Psychometric characterization of the Obstetric Communication Assessment Tool for medical education: a pilot study
Cited by: 2
Author(s): Aldeboran N. Rodriguez, Peter DeWitt, Jennifer Fisher, Kirsten J. Broadfoot, K. Joseph Hurt
Software Mentions: 4
Published: about 10 years ago

10.3390/nu10050558

Assessment of Lactose-Free Diet on the Phalangeal Bone Mineral Status in Italian Adolescents Affected by Adult-Type Hypolactasia
Cited by: 10
Author(s): Alessandro Baldan, Sylvie Tagliati, D Saccomandi, Andrea Brusaferro, Laura Busoli, Andrea Scala, Cristina Malaventura, Giuseppe Maggiore, Caterina Borgna‐Pignatti
Software Mentions: 4
Published: about 8 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.2810

Testing the role of ancient and contemporary landscapes on structuring genetic variation in a specialist grasshopper
Cited by: 9
Author(s): Víctor Noguerales, Pedro J. Cordero, Joaquín Ortego
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.65582

Neural correlates of ingroup bias for prosociality in rats
Cited by: 25
Author(s): Inbal Ben-Ami Bartal, Jocelyn Breton, Huanjie Sheng, Kimberly L.P. Long, Stella Chen, Aline Halliday, Justin W. Kenney, Anne L. Wheeler, Paul W. Frankland, Carrie Shilyansky, Karl Deisseroth, Dacher Keltner, Daniela Kaufer
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.02043

Protists Within Corals: The Hidden Diversity
Cited by: 23
Author(s): Camille Clérissi, Sébastien Brunet, Jérémie Vidal-Dupiol, Mehdi Adjeroud, Pierre Lepage, Laure Guillou, Jean-Michel Escoubas, Ève Toulza
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2017.00457

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts
Cited by: 19
Author(s): Irene Stefanini, Silvia Carlin, Noemi Tocci, Davide Albanese, Claudio Donati, Pietro Franceschi, Michele Paris, Alberto Zenato, Silvano Tempesta, Alberto Bronzato, Urška Vrhovšek, Fulvio Mattivi, Duccio Cavalieri
Software Mentions: 4
Published: over 9 years ago

10.3389/fphys.2016.00606

Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine
Cited by: 30
Author(s): Alejandra Contreras, Benjamin Cocom-Chan, Georgina Hernández-Montes, Tobías Portillo-Bobadilla, Osbaldo Resendis‐Antonio
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0250022

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds
Cited by: 7
Author(s): João Vitor Campos‐Silva, Carlos A. Peres, Joseph E. Hawes, Mark I. Abrahams, Paulo César Machado Andrade, L. Davenport
Software Mentions: 4
Published: over 5 years ago

10.1080/19490976.2021.1897209

The high prevalence of <i>Clostridioides difficile</i> among nursing home elders associates with a dysbiotic microbiome
Cited by: 6
Author(s): John P. Haran, Doyle V. Ward, Shakti Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0067720

Factors Determining Forest Diversity and Biomass on a Tropical Volcano, Mt. Rinjani, Lombok, Indonesia
Cited by: 26
Author(s): Gbadamassi G.O. Dossa, Ekananda Paudel, Junichi Fujinuma, Haiying Yu, Wanlop Chutipong, Zuoqiang Yuan, Sherryl L. Paz, Rhett D. Harrison
Software Mentions: 4
Published: about 13 years ago

10.1038/s41598-021-82976-w

Integrated analysis identifies oxidative stress genes associated with progression and prognosis in gastric cancer
Cited by: 29
Author(s): Zhengyuan Wu, Lin Wang, Zhenpei Wen, Jun Yao
Software Mentions: 4
Published: over 5 years ago

10.1099/mgen.0.000039

Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case
Cited by: 9
Author(s): Steven T. Pullan, Talima Pearson, Jennie Latham, Joanne Mason, Barry Atkinson, Nigel Silman, Chung K. Marston, Jason W. Sahl, Dawn N. Birdsell, Alex R. Hoffmaster, Paul Keim, Richard Vipond
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0204195

Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae
Cited by: 37
Author(s): Lionel Lebreton, Anne‐Yvonne Guillerm‐Erckelboudt, Kévin Gazengel, Juliette Linglin, Morgane Ourry, Pascal Glory, Alain Sarniguet, Stéphanie Daval, Maria Manzanares-Dauleux, Christophe Mougel
Software Mentions: 4
Published: over 7 years ago

10.1002/lno.11361

The global <i>Microcystis</i> interactome
Cited by: 51
Author(s): Katherine V. Cook, Chuang Li, Haiyuan Cai, Lee R. Krumholz, K. David Hambright, Hans W. Paerl, Morgan M. Steffen, Alan E. Wilson, Michele A. Burford, Hans‐Peter Grossart, David P. Hamilton, Helong Jiang, Assaf Sukenik, Delphine Latour, Elisabeth I. Meyer, Judit Padisák, Boqiang Qin, Richard M. Zamor, Guangwei Zhu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0100018

Transcriptome Profiling Reveals Higher Vertebrate Orthologous of Intra-Cytoplasmic Pattern Recognition Receptors in Grey Bamboo Shark
Cited by: 18
Author(s): Tirumurugaan Krishnaswamy Gopalan, Pradheepa Gururaj, Ravi P. Gupta, Gopal Dhinakar Raj, Preeti Rajesh, Balachandran Chidambaram, Aravindan Kalyanasundaram, R. Amri
Software Mentions: 4
Published: about 12 years ago

10.1186/s13062-019-0243-z

Identification of city specific important bacterial signature for the MetaSUB CAMDA challenge microbiome data
Cited by: 21
Author(s): Alejandro R. Walker, Susmita Datta
Software Mentions: 4
Published: about 7 years ago

10.1111/joa.12994

Fabella prevalence rate increases over 150 years, and rates of other sesamoid bones remain constant: a systematic review
Cited by: 25
Author(s): Michael A. Berthaume, Erica Di Federico, Anthony M.J. Bull
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-017-4002-1

Evaluation and comparison of computational tools for RNA-seq isoform quantification
Cited by: 132
Author(s): Chi Zhang, Baohong Zhang, Lih-Ling Lin, Shanrong Zhao
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12898-019-0270-8

Increased songbird nest depredation due to Aleppo pine (Pinus halepensis) encroachment in Mediterranean shrubland
Cited by: 5
Author(s): Asaf Ben-David, Hila Shamon, Ido Izhaki, Ronny Efronny, Roi Maor, Tamar Dayan
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-84647-2

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
Cited by: 8
Author(s): Timothy I. Shaw, Li Dong, Liqing Tian, Chenxi Qian, Yu Liu, Bensheng Ju, Anthony A. High, Kanisha Kavdia, Vishwajeeth Pagala, Bridget Shaner, Deqing Pei, John Easton, Laura J. Janke, Shaina N. Porter, Xiaotu Ma, Cheng Cheng, Shondra M. Pruett-Miller, John K. Choi, Jiyang Yu, Junmin Peng, Wei Gu, A. Thomas Look, James R. Downing, Jinghui Zhang
Software Mentions: 4
Published: over 5 years ago

10.3390/nu9121307

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization
Cited by: 14
Author(s): Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoué, Taisei Kanamoto, Jun Kikuchi
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0074165

Spatiotemporal Dynamics and Epistatic Interaction Sites in Dengue Virus Type 1: A Comprehensive Sequence-Based Analysis
Cited by: 12
Author(s): Pei‐Yu Chu, Guan-Ming Ke, Po-Chih Chen, Li‐Teh Liu, Yen-Chun Tsai, Jih‐Jin Tsai
Software Mentions: 4
Published: almost 13 years ago

10.3390/cells9081776

A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cited by: 22
Author(s): Mourdas Mohamed, Nguyet Thi-Minh Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, Matthieu Boulesteix, Vincent Mérel, Philippe Veber, Judit Salces-Ortiz, Dany Séverac, Alain Pélisson, Cristina Vieira, François Sabot, Marie Fablet, Séverine Chambeyron
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-017-2000-6

A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy
Cited by: 53
Author(s): Daniel P. Wickland, Gopal Battu, Karen A. Hudson, Brian W. Diers, Matthew E. Hudson
Software Mentions: 4
Published: over 8 years ago

10.3390/ani10040676

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Cited by: 11
Author(s): Francesca Romana Massacci, Alessandra Morelli, Lucilla Cucco, Adrien Castinel, Roberta Ortenzi, Silvia Tofani, Giovanni Pezzotti, Jordi Estellé, Marta Paniccià, Chiara Francesca Magistrali
Software Mentions: 4
Published: over 6 years ago

10.1093/gbe/evaa053

Divergence-Based Introgression Polarization
Cited by: 8
Author(s): Evan S. Forsythe, Daniel B Sloan, Mark A. Beilstein
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0180561

Three distinct pneumotypes characterize the microbiome of the lung in BALB/cJ mice
Cited by: 7
Author(s): Julia Scheiermann, Dennis M. Klinman
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0187666

Motor expertise facilitates the accuracy of state extrapolation in perception
Cited by: 5
Author(s): Nicolas Ludolph, Jannis Plöger, Martin A. Giese, Winfried Ilg
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0209055

Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure
Cited by: 14
Author(s): Lauren Gillies Campbell, J. Cameron Thrash, Nancy N. Rabalais, Olivia U. Mason
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0146916

Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli
Cited by: 15
Author(s): Sophie Weiss, Thomas J. Mansell, Pooneh Mortazavi, Rob Knight, Ryan T. Gill
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2018.00297

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks
Cited by: 10
Author(s): Tatiana V. Karpinets, Vancheswaran Gopalakrishnan, Jennifer A. Wargo, Andrew Futreal, Christopher W. Schadt, Jianhua Zhang
Software Mentions: 4
Published: over 8 years ago

10.3389/fpsyg.2021.684639

The Influence of Focus Marking on Pronoun Resolution in Dialogue Context
Cited by: 3
Author(s): Liam Blything, Juhani Järvikivi, Abigail Toth, Anja Arnhold
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.01400

Complete Assembly of the Genome of an Acidovorax citrulli Strain Reveals a Naturally Occurring Plasmid in This Species
Cited by: 11
Author(s): Rongzhi Yang, Diego Santos-García, Francisco Pérez‐Montaño, Gustavo Mateus da Silva, Mei Zhao, Irene Jiménez‐Guerrero, Tally Rosenberg, Gong Chen, Inbar Plaschkes, Shai Morin, R. R. Walcott, Saul Burdman
Software Mentions: 4
Published: about 7 years ago

10.1016/j.csbj.2020.09.033

Deep metabolome: Applications of deep learning in metabolomics
Cited by: 76
Author(s): Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes F. Fahrmann, Dmitry Grapov, Sakda Khoomrung
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-021-02244-5

Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology
Cited by: 19
Author(s): Ian M. Ware, Michael E. Van Nuland, Zamin K. Yang, Christopher W. Schadt, Jennifer A. Schweitzer, Joseph K. Bailey
Software Mentions: 4
Published: about 5 years ago

10.1093/conphys/coz073

Thermal physiology and activity in relation to reproductive status and sex in a free-ranging semelparous marsupial
Cited by: 6
Author(s): Cassandra A. Parker, Fritz Geiser, Clare Stawski
Software Mentions: 4
Published: over 7 years ago

10.2196/27214

Google Trends for Pain Search Terms in the World’s Most Populated Regions Before and After the First Recorded COVID-19 Case: Infodemiological Study
Cited by: 13
Author(s): Istvan S. Szilagyi, Torsten Ullrich, Kordula Lang-Illievich, Christoph Klivinyi, Gregor Alexander Schittek, Holger Simonis, Helmar Bornemann‐Cimenti
Software Mentions: 4
Published: over 5 years ago

10.1111/acel.13293

Novel DNA methylation marker discovery by assumption‐free genome‐wide association analysis of cognitive function in twins
Cited by: 4
Author(s): Afsaneh Mohammadnejad, Mette Soerensen, Jan Baumbach, Jonas Mengel‐From, Weilong Li, Jesper Lund, Shuxia Li, Lene Christiansen, Kaare Christensen, Jacob Hjelmborg, Qihua Tan
Software Mentions: 4
Published: over 5 years ago

10.1186/s13054-021-03469-w

High-flow nasal oxygen in patients with COVID-19-associated acute respiratory failure
Cited by: 125
Author(s): Ricard Mellado Artigas, Bruno L. Ferreyro, Federico Angriman, María L. Hernández-Sanz, Egoitz Arruti, Antoni Torres, Jesús Villar, Laurent Brochard, Carlos Ferrando
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.594136

Efferocytic Defects in Early Atherosclerosis Are Driven by GATA2 Overexpression in Macrophages
Cited by: 22
Author(s): Charles Yin, Angela M. Vrieze, Mara Rosoga, James Akingbasote, Emily N. Pawlak, Rajesh Jacob, Jonathan Hu, Neha Sharma, Jimmy D. Dikeakos, Lillian Barra, A. Dave Nagpal, Bryan Heit
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0076746

Meta-Analysis Identifies NF-κB as a Therapeutic Target in Renal Cancer
Cited by: 37
Author(s): Suraj Peri, Karthik Devarajan, Dong‐Hua Yang, Alfred G. Knudson, Siddharth Balachandran
Software Mentions: 4
Published: almost 13 years ago

10.1002/ece3.5229

Some like it dry: Water restriction overrides heterogametic sex determination in two reptiles
Cited by: 17
Author(s): Andréaz Dupoué, Olivier Lourdais, Sandrine Meylan, François Brischoux, Frédéric Angelier, David Rozen‐Rechels, Yoan Marcangeli, Béatriz Decencière, Simon Agostini, Jean‐François Le Galliard
Software Mentions: 4
Published: about 7 years ago

10.3389/fimmu.2019.01063

α7 Nicotinic Acetylcholine Receptor Signaling Modulates Ovine Fetal Brain Astrocytes Transcriptome in Response to Endotoxin
Cited by: 16
Author(s): Mingju Cao, James W. MacDonald, Hai L. Liu, Molly Weaver, Marina Farrel Cortês, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Jay Schulkin, Marta C. Antonelli, Raphael Bernier, Michael O. Dorschner, Theo K. Bammler, Martin G. Frasch
Software Mentions: 4
Published: about 7 years ago

10.3389/fpsyg.2020.01245

Linking Diversity and Mental Health: Task Conflict Mediates Between Perceived Subgroups and Emotional Exhaustion
Cited by: 7
Author(s): Niklas Schulte, Friedrich M. Götz, Fabienne Partsch, Tim Goldmann, Lea Smidt, Bertolt Meyer
Software Mentions: 4
Published: about 6 years ago

10.1534/genetics.120.303474

Age and Genetic Background Modify Hybrid Male Sterility in House Mice
Cited by: 17
Author(s): Samuel J. Widmayer, Mary Ann Handel, David L. Aylor
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.40162

Motion sensing superpixels (MOSES) is a systematic computational framework to quantify and discover cellular motion phenotypes
Cited by: 8
Author(s): Felix Zhou, Carlos Ruiz‐Puig, Richard Owen, Michael J. White, Jens Rittscher, Xin Lü
Software Mentions: 4
Published: over 7 years ago

10.3389/fpsyg.2017.01887

Sentence-Level Effects of Literary Genre: Behavioral and Electrophysiological Evidence
Cited by: 8
Author(s): Stefan Blohm, Winfried Menninghaus, Matthias Schlesewsky
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2164-16-S7-S13

MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures
Cited by: 6
Author(s): Yizhe Zhang, Yiping He, Guangyong Zheng, Chaochun Wei
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0022022

Origin and Evolution of TRIM Proteins: New Insights from the Complete TRIM Repertoire of Zebrafish and Pufferfish
Cited by: 94
Author(s): Pierre Boudinot, Lieke M. van der Aa, Luc Jouneau, Louis Du Pasquier, Pierre Pontarotti, Valérie Briolat, Abdenour Benmansour, Jean‐Pierre Levraud
Software Mentions: 4
Published: about 15 years ago

10.3390/md19080442

Ubiquitousness of Haloferax and Carotenoid Producing Genes in Arabian Sea Coastal Biosystems of India
Cited by: 4
Author(s): Jamseel Moopantakath, Madangchanok Imchen, Ranjith Kumavath, Rosa María Martínez‐Espinosa
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.632947

Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic Particulates
Cited by: 7
Author(s): Elena Gorokhova, Asa Motiei, Rehab El-Shehawy
Software Mentions: 4
Published: about 5 years ago

10.1080/20002297.2019.1633194

Bacterial biofilm composition in healthy subjects with and without caries experience.
Cited by: 37
Author(s): Kyrill Schoilew, Helena Ueffing, Alexander H. Dalpke, Björn Wolff, Cornelia Frese, Diana Wolff, Sébastien Boutin
Software Mentions: 4
Published: over 7 years ago

10.1080/01652176.2020.1745317

Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota
Cited by: 11
Author(s): Sarah Kaiser‐Thom, Markus Hilty, Vinzenz Gerber
Software Mentions: 4
Published: over 6 years ago