10.1099/mgen.0.000070

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
Cited by: 53
Author(s): Tim Dallman, Thomas Inns, Thibaut Jombart, Philip Ashton, Nicholas J. Loman, Carol Chatt, Ute Messelhaeusser, Wolfgang Rabsch, Sandra Simon, Sergejs Nikisins, Helen Bernard, Simon Le Hello, Nathalie Jourdan da-Silva, Christian Kornschober, Joël Mossong, Peter M. Hawkey, Elizabeth de Pinna, Kathie Grant, Paul Cleary
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12983-019-0345-6

Characteristics of tiger moth (Erebidae: Arctiinae) anti-bat sounds can be predicted from tymbal morphology
Cited by: 7
Author(s): Nicolas J. Dowdy, William E. Conner
Software Mentions: 4
Published: over 6 years ago

10.1002/mbo3.727

Change in the intestinal bacterial community structure associated with environmental microorganisms during the growth of <i>Eriocheir sinensis</i>
Cited by: 25
Author(s): Chenhe Wang, Yanfeng Zhou, Dawei Lv, You Ge, Huan Li, You Yang
Software Mentions: 4
Published: almost 8 years ago

10.1038/srep37712

Inter-annual maintenance of the fine-scale genetic structure in a biennial plant
Cited by: 9
Author(s): Javier Valverde, José M. Gómez, Cristina García, Timothy F. Sharbel, M.N. Jiménez, Francisco Perfectti
Software Mentions: 4
Published: over 9 years ago

10.1111/tbed.13661

Different environmental gradients associated to the spatiotemporal and genetic pattern of the H5N8 highly pathogenic avian influenza outbreaks in poultry in Italy
Cited by: 6
Author(s): Francesca Scolamacchia, Paolo Mulatti, Matteo Mazzucato, Marco Barbujani, William T. Harvey, Alice Fusaro, Isabella Monne, Stefano Marangon
Software Mentions: 4
Published: about 6 years ago

10.1007/s10764-018-0069-z

Food-Offering Calls in Wild Golden Lion Tamarins (Leontopithecus rosalia): Evidence for Teaching Behavior?
Cited by: 9
Author(s): Camille A. Troisi, William Hoppitt, Carlos R. Ruiz‐Miranda, Kevin N. Laland
Software Mentions: 4
Published: over 7 years ago

10.1093/jisesa/ieab027

Field Borders Provide Winter Refuge for Beneficial Predators and Parasitoids: A Case Study on Organic Farms
Cited by: 7
Author(s): C. Scott Clem, Alexandra N. Harmon‐Threatt
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-017-0370-7

The Inuit gut microbiome is dynamic over time and shaped by traditional foods
Cited by: 43
Author(s): Geneviève Dubois, Catherine Girard, François‐Joseph Lapointe, B. Jesse Shapiro
Software Mentions: 4
Published: over 8 years ago

10.3390/microorganisms9081585

Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Cited by: 11
Author(s): Ana C. Reis, Liliana C. M. Salvador, Suelee Robbe‐Austerman, Rogério Tenreiro, Ana Botelho, Teresa Albuquerque, Mónica V. Cunha
Software Mentions: 4
Published: about 5 years ago

10.3390/molecules25235505

Carbon Atoms Speaking Out: How the Geometric Sensitivity of 13C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
Cited by: 5
Author(s): Sascha Jähnigen, Daniel Sebastiani
Software Mentions: 4
Published: over 5 years ago

10.1186/s40851-015-0013-4

Spatial and temporal variation at major histocompatibility complex class IIB genes in the endangered Blakiston’s fish owl
Cited by: 18
Author(s): Tetsuo I. Kohyama, Keita Omote, Chizuko Nishida, Takeshi Takenaka, Keisuke Saito, Satoshi Fujimoto, Ryuichi Masuda
Software Mentions: 4
Published: over 11 years ago

10.3390/pathogens9090723

Differences in the Endophytic Microbiome of Olive Cultivars Infected by Xylella fastidiosa across Seasons
Cited by: 35
Author(s): Annalisa Giampetruzzi, Paula Baptista, Massimiliano Morelli, Cristina Cameirão, Teresa Lino-Neto, Daniela Costa, Giusy D’Attoma, Raied Abou Kubaa, Giuseppe Altamura, María Saponari, José Alberto Pereira, P. Saldarelli
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.2768

Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America
Cited by: 44
Author(s): Jana M. U’Ren, A. Elizabeth Arnold
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.1028

Genetic architecture of pollination syndrome transition between hummingbird-specialist and generalist species in the genus<i>Rhytidophyllum</i>(Gesneriaceae)
Cited by: 20
Author(s): Hermine Alexandre, Justine Vrignaud, Brigitte Mangin, Simon Joly
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pcbi.1008924

Incorporating the speciation process into species delimitation
Cited by: 48
Author(s): Jeet Sukumaran, Mark T. Holder, L. Lacey Knowles
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.3667

Changes in zooplankton community, and seston and zooplankton fatty acid profiles at the freshwater/saltwater interface of the Chowan River, North Carolina
Cited by: 8
Author(s): Deborah A. Lichti, Jacques Rinchard, David G. Kimmel
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.9388

Geographic variation in the skull morphology of the lesser grison (<i>Galictis cuja</i>: Carnivora, Mustelidae) from two Brazilian ecoregions
Cited by: 4
Author(s): Raissa Prior Migliorini, Rodrigo Fornel, Carlos Benhur Kasper
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8991

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit
Cited by: 9
Author(s): Víctor Olalde‐Portugal, José Luis Cabrera-Ponce, Argel Gastélum-Arellánez, Armando Guerrero‐Rangel, Robert Winkler, Silvia Valdés‐Rodríguez
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2017.02179

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease
Cited by: 83
Author(s): Yang Heng, Juan Li, Yunhua Xiao, Yanling Gu, Hongwei Liu, Yili Liang, Xueduan Liu, Jin Hu, Delong Meng, Huaqun Yin
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-57546-1

Genomic Survey of Salt Acclimation-Related Genes in the Halophilic Cyanobacterium Euhalothece sp. Z-M001
Cited by: 14
Author(s): Hee Wook Yang, Ji-Young Song, Sung Mi Cho, Hak Cheol Kwon, Cheol‐Ho Pan, Youn‐Il Park
Software Mentions: 4
Published: over 6 years ago

10.1016/j.stemcr.2019.08.014

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation
Cited by: 17
Author(s): Hiromitsu Araki, Fumihito Miura, Akira Watanabe, Chikako Morinaga, Fumiyo Kitaoka, Yuko Kitano, Noriko Sakai, Yu Shibata, Makoto Terada, So Goto, Shinya Yamanaka, Masayo Takahashi, Takashi Ito
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2288-12-184

Auxiliary variables in multiple imputation in regression with missing X: a warning against including too many in small sample research
Cited by: 113
Author(s): Jochen Hardt, Max Herke, Rainer Leonhart
Software Mentions: 4
Published: over 13 years ago

10.1186/s12887-015-0493-6

Interrelationships between BMI, skinfold thicknesses, percent body fat, and cardiovascular disease risk factors among U.S. children and adolescents
Cited by: 38
Author(s): David S. Freedman, Cynthia L. Ogden, Brian K. Kit
Software Mentions: 4
Published: over 10 years ago

10.1186/1476-4598-9-213

Loss, mutation and deregulation of L3MBTL4 in breast cancers
Cited by: 46
Author(s): Lynda Addou-Klouche, José Adélaı̈de, Pascal Finetti, Nathalie Cervera, Anthony Ferrari, Ismahane Bekhouche, Fabrice Sircoulomb, Christos Sotiriou, Patrice Viens, Soraya Moulessehoul, François Bertucci, Daniel Birnbaum, Max Chaffanet
Software Mentions: 4
Published: almost 16 years ago

10.1002/ece3.7225

Differential geographic patterns in song components of male Albert’s lyrebirds
Cited by: 4
Author(s): Fiona Backhouse, Anastasia H. Dalziell, Robert D. Magrath, Aaron N. Rice, Taylor L. Crisologo, Justin A. Welbergen
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3682

Rule reversal: Ecogeographical patterns of body size variation in the common treeshrew (Mammalia, Scandentia)
Cited by: 18
Author(s): Eric J. Sargis, Virginie Millien, Neal Woodman, Link E. Olson
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-39847-2

Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Cited by: 28
Author(s): Wojciech Gałan, Maciej Bąk, Małgorzata Jakubowska
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.7620

Prey availability and intraguild competition regulate the spatiotemporal dynamics of a modified large carnivore guild
Cited by: 10
Author(s): Robert S. Davis, Richard W. Yarnell, Louise K. Gentle, Antonio Uzal, William O. Mgoola, Emma L. Stone
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.5964

Opening the door to greater phylogeographic inference in Southeast Asia: Comparative genomic study of five codistributed rainforest bird species using target capture and historical DNA
Cited by: 9
Author(s): Haw Chuan Lim, Subir B. Shakya, Michael Harvey, Robert G. Moyle, Robert C. Fleischer, Michael J. Braun, Frederick H. Sheldon
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0236495

An unbiased template of the Drosophila brain and ventral nerve cord
Cited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-74333-0

Winter movement patterns of a globally endangered avian scavenger in south-western Europe
Cited by: 8
Author(s): Jon Morant, José M. Abad‐Gómez, Toribio Álvarez, Ángel Sánchez, Íñigo Zuberogoitia, Pascual López‐López
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.929

Evidence for nonallopatric speciation among closely related sympatric<i><scp>H</scp>eliotropium</i>species in the<scp>A</scp>tacama<scp>D</scp>esert
Cited by: 10
Author(s): Federico Luebert, Pit Jacobs, Hartmut H. Hilger, Ludo A. H. Muller
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0188447

Testing the applicability of a benthic foraminiferal-based transfer function for the reconstruction of paleowater depth changes in Rhodes (Greece) during the early Pleistocene
Cited by: 13
Author(s): Yvonne Milker, Manuel F. G. Weinkauf, Jürgen Titschack, André Freiwald, Stefan Krüger, Frans Jorissen, Gerhard Schmiedl
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0006825

Re-Shuffling of Species with Climate Disruption: A No-Analog Future for California Birds?
Cited by: 185
Author(s): Diana Stralberg, Dennis Jongsomjit, Christine A. Howell, Mark A. Snyder, John D. Alexander, John A. Wiens, Terry L. Root
Software Mentions: 4
Published: almost 17 years ago

10.3390/genes8100273

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: almost 9 years ago

10.1186/1471-2105-13-166

Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation
Cited by: 10
Author(s): George Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William R. Widger, Yuriy Fofanov
Software Mentions: 4
Published: about 14 years ago

10.1186/1471-2164-7-38

Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development
Cited by: 31
Author(s): Cristian Becerra, Pere Puigdomènech, Carlos M. Vicient
Software Mentions: 4
Published: over 20 years ago

10.1186/s13104-017-2424-0

Quantitative morphological analysis of 2D images of complex-shaped branching biological growth forms: the example of branching thalli of liverworts
Cited by: 3
Author(s): Pirom Konglerd, Catherine Reeb, Fredrik Jansson, Jaap A. Kaandorp
Software Mentions: 4
Published: over 9 years ago

10.1186/s13104-018-3802-y

Empowering the detection of ChIP-seq “basic peaks” (bPeaks) in small eukaryotic genomes with a web user-interactive interface
Cited by: 3
Author(s): Thomas Denecker, Gaëlle Lelandais
Software Mentions: 4
Published: almost 8 years ago

10.1016/j.mex.2019.100775

PHARMIP: An insilico method to predict genetics that underpin adverse drug reactions
Cited by: 6
Author(s): Ahmad Zidan, Eman A. Saad, Nasser E. Ibrahim, Amal Mahmoud, Medhat H. Hashem, Alaa A. Hemeida
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1005848

A Founder Mutation in VPS11 Causes an Autosomal Recessive Leukoencephalopathy Linked to Autophagic Defects
Cited by: 47
Author(s): Jinglan Zhang, Véronik Lachance, Adam D. Schaffner, Xianting Li, Anastasia Fedick, Lauren E. Kaye, Jun Liao, Jill A. Rosenfeld, Naomi Yachelevich, Mary Lynn Chu, Wendy G. Mitchell, Richard G. Boles, Ellen Moran, Mari Tokita, Elizabeth Gorman, Kaytee Bagley, Wei Zhang, Fan Xia, Magalie S. Leduc, Yaping Yang, Christine M. Eng, Lee Jun Wong, Raphael Schiffmann, George A. Diaz, Ruth Kornreich, Ryan Thummel, Melissa P. Wasserstein, Zhenyu Yue, Lisa Edelmann
Software Mentions: 4
Published: about 10 years ago

10.1002/ece3.2924

Sustained functional composition of pollinators in restored pastures despite slow functional restoration of plants
Cited by: 18
Author(s): Marie Winsa, Erik Öckinger, Riccardo Bommarco, Regina Lindborg, Stuart P. M. Roberts, Johanna Wärnsberg, Ignasi Bartomeus
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-020-07118-4

Transcriptome-IPMS analysis reveals a tissue-dependent miR156/SPL13 regulatory mechanism in alfalfa drought tolerance
Cited by: 6
Author(s): Biruk A. Feyissa, Justin B. Renaud, Vida Nasrollahi, Susanne E. Kohalmi, Abdelali Hannoufa
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.3925

Environmental determinism, and not interspecific competition, drives morphological variability in Australasian warblers (Acanthizidae)
Cited by: 3
Author(s): Vicente García‐Navas, Marta Rodríguez-Rey, Petter Z. Marki, Leslie Christidis
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4305

Lake regionalization and diatom metacommunity structuring in tropical South America
Cited by: 46
Author(s): Xavier Benito, Sherilyn C. Fritz, Miriam Steinitz‐Kannan, María Isabel Álvarez Vélez, Michael M. McGlue
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.5798

The effects of management on vegetation trajectories during the early‐stage restoration of previously arable land after hay transfer
Cited by: 2
Author(s): Myriam Garrouj, Didier Alard, Emmanuel Corcket, Lilian Marchand, Marie‐Lise Benot
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4448

Functional Redundancy in bird community decreases with riparian forest width reduction
Cited by: 11
Author(s): Lucas Andrigo Maure, Rodolpho Credo Rodrigues, Ângelo V. Alcântara, Bruno F. C. B. Adorno, Douglas Luiz dos Santos, Eduardo Abreu, Rafael Mitsuo Tanaka, R. Manoel Gonçalves, Érica Hasui
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.6404

“A cleaner break”: Genetic divergence between geographic groups and sympatric phenotypes revealed in ballan wrasse (<i>Labrus bergylta</i>)
Cited by: 9
Author(s): Gaute Wilhelmsen Seljestad, María Quintela, Ellika Faust, Kim Tallaksen Halvorsen, François Besnier, Eva Jansson, Geir Dahle, Halvor Knutsen, Carl André, Arild Folkvord, Kevin A. Glover
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.5031

Intraspecific and interspecific trait variability in tadpole meta‐communities from the Brazilian Atlantic rainforest
Cited by: 22
Author(s): Mainara Xavier Jordani, Nicolas Mouquet, Lílian Casatti, Marcelo Menin, Denise de Cerqueira Rossa‐Feres, Cécile H. Albert
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.1994

Morphological and niche divergence of pinyon pines
Cited by: 12
Author(s): Alejandra Ortíz-Medrano, Daniel P. Scantlebury, Alejandra Vázquez‐Lobo, Alicia Mastretta‐Yanes, Daniel Piñero
Software Mentions: 4
Published: over 10 years ago

10.1186/s13068-016-0608-9

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Cited by: 91
Author(s): Jaana Kuuskeri, Mari Häkkinen, Pia Laine, Olli‐Pekka Smolander, Fitsum Tamene, Sini Miettinen, Paula Nousiainen, Marianna Kemell, Petri Auvinen, Taina Lundell
Software Mentions: 4
Published: almost 10 years ago

10.1111/eva.12855

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees
Cited by: 32
Author(s): Pascal Milesi, Mats Berlin, Jun Chen, Marion Orsucci, Lili Li, Gunnar Jansson, Bo Karlsson, Martin Lascoux
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnbeh.2020.618180

PsyCoP – A Platform for Systematic Semi-Automated Behavioral and Cognitive Profiling Reveals Gene and Environment Dependent Impairments of Tcf4 Transgenic Mice Subjected to Social Defeat
Cited by: 8
Author(s): Paul Volkmann, Marius Stephan, Sven Krackow, Niels Rosendal Jensen, Moritz J. Rossner
Software Mentions: 4
Published: over 5 years ago

10.3389/fcimb.2021.573923

Impact of the Gut Microbiome on the Progression of Hepatitis B Virus Related Acute-on-Chronic Liver Failure
Cited by: 6
Author(s): Xuebing Yao, Haiping Yu, Guoyin Fan, Haihong Xiang, Li‐Hong Long, Hui Xu, Zhiguo Wu, Mingfa Chen, Wen-Na Xi, Gao Z, Cuiyun Liu, Wenlan Gong, Aoyu Yang, Ke Sun, Rongyan Yu, Junrong Liang, Baogang Xie, Shihui Sun
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.01035

Population Genomics of the Neotropical Brown Stink Bug, Euschistus heros: The Most Important Emerging Insect Pest to Soybean in Brazil
Cited by: 15
Author(s): Maria Imaculada Zucchi, Erick M. G. Cordeiro, Weijie Xing, Letícia Marise Lamana, Patrick J. Brown, Shilpa Manjunatha, João Paulo Gomes Viana, Celso Omoto, José Baldin Pinheiro, Steven J. Clough
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.00167

The Environment and Cyanophage Diversity: Insights From Environmental Sequencing of DNA Polymerase
Cited by: 14
Author(s): Jan F. Finke, Curtis A. Suttle
Software Mentions: 4
Published: over 7 years ago

10.1016/j.molcel.2021.06.016

Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
Cited by: 31
Author(s): Ashwin Narain, Pranjali Bhandare, Bikash Adhikari, Simone Backes, Martin Eilers, Lars Dölken, Andreas Schlösser, Florian Erhard, Apoorva Baluapuri, Elmar Wolf
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2016.00403

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat
Cited by: 58
Author(s): Morgane Comby, Sandrine Lacoste, Fabienne Baillieul, Camille Profizi, Joëlle Dupont
Software Mentions: 4
Published: over 10 years ago

10.1074/mcp.RA117.000189

Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC)
Cited by: 63
Author(s): Katarzyna Buczak, Alessandro Ori, Joanna Kirkpatrick, Kerstin Hölzer, Daniel Dauch, Stephanie Roessler, Volker Endris, Felix Lasitschka, Luca Parca, Alexander Schmidt, Lars Zender, Peter Schirmacher, Jeroen Krijgsveld, Stephan Singer, Martin Beck
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2018.01290

Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes
Cited by: 23
Author(s): Christina Böck, Michaela M. Salcher, Manfred Jensen, Ram Vinay Pandey, Jens Boenigk
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pgen.1008551

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance
Cited by: 32
Author(s): Patrícia Alves de Castro, Ana Cristina Colabardini, Adriana Oliveira Manfiolli, Jéssica Chiaratto, Lilian Pereira Silva, Eliciane Cevolani Mattos, Giuseppe Palmisano, Fausto Almeida, Gabriela Félix Persinoti, Laure Nicolas Annick Ries, Laura Mellado, Marina Campos Rocha, Michael Bromley, Roberto Nascimento Silva, Gabriel Scalini de Souza, Flávio Vieira Loures, Iran Malavazi, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0006351

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)
Cited by: 9
Author(s): Gilberto Santos de Oliveira, Rebeca Kawahara, Lívia Rosa-Fernandes, Simon Ngao Mule, Carla Cristi Avila, Marta Maria Geraldes Teixeira, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2015.01500

Dynamics of Bacterial Community Composition in the Malaria Mosquito's Epithelia
Cited by: 68
Author(s): Majoline T. Tchioffo, Anne Boissière, Luc Abate, Sandrine E. Nsango, Albert N. Bayibéki, Parfait Awono-Ambene, Richard Christen, Geoffrey Gimonneau, Isabelle Morlais
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-92027-z

Changes in gut microbiota in the acute phase after spinal cord injury correlate with severity of the lesion
Cited by: 29
Author(s): Gabriele Bazzocchi, Silvia Turroni, Maria Chiara Bulzamini, Federica D’Amico, Angelica Bava, Massimo Castiglioni, Valentina Cagnetta, Ernesto Losavio, Maurizio Cazzaniga, Laura Terenghi, Luisa De Palma, Giampiero Frasca, Beatrice Aiachini, Sonia Cremascoli, Antonino Massone, Claudia Oggerino, Maria Pia Onesta, Laura Rapisarda, Maria Cristina Pagliacci, Sauro Biscotto, Michele Scarazzato, Tiziana Giovannini, Mimosa Balloni, Marco Candela, Patrizia Brigidi, Carlotte Kiekens
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-96205-x

Diversity of MHC IIB genes and parasitism in hybrids of evolutionarily divergent cyprinoid species indicate heterosis advantage
Cited by: 4
Author(s): Andrea Vetešníková Šimková, Lenka Gettová, Kristína Civáňová, Mária Seifertová, Michal Janáč, Lukáš Vetešník
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-97654-0

Assessment of the effectiveness of the EUROFORGEN NAME and Precision ID Ancestry panel markers for ancestry investigations
Cited by: 8
Author(s): Ditte Truelsen, Torben Tvedebrink, Helle Smidt Mogensen, Maryam Sharafi Farzad, Muhammad Adnan Shan, Niels Morling, Vânia Pereira, Claus Børsting
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0235263

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications
Cited by: 2
Author(s): George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier
Software Mentions: 4
Published: about 6 years ago

10.1128/mBio.01451-21

Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant <i>Escherichia coli</i> ST131
Cited by: 10
Author(s): Richard Bonnet, Racha Beyrouthy, Marisa Haenni, Marie–Hélène Nicolas–Chanoine, Guillaume Dalmasso, Jean‐Yves Madec
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSystems.00044-18

A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults
Cited by: 127
Author(s): Owen Cronin, Wiley Barton, Peter Skuse, Nicholas Penney, Isabel García-Pérez, Eileen F. Murphy, Trevor Woods, Helena Nugent, Áine Fanning, Silvia Melgar, Éanna Falvey, Elaine Holmes, Paul D. Cotter, Órla O’Sullivan, Michael G. Molloy, Fergus Shanahan
Software Mentions: 4
Published: about 8 years ago

10.1093/plankt/fbab033

Key drivers structuring rotifer communities in ponds: insights into an agricultural landscape
Cited by: 10
Author(s): Gabriela Onandía, Sebastian Maassen, Camille Musseau, Stella A. Berger, Carla Olmo, Jonathan M. Jeschke, Gunnar Lischeid
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0206317

Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Cited by: 11
Author(s): Kayode T. Adu, Richard Wilson, David S. Nichols, Anthony L. Baker, John P. Bowman, ML Britz
Software Mentions: 4
Published: almost 8 years ago

10.3390/ani11092702

Trait Plasticity among Invasive Populations of the Ant Technomyrmex brunneus in Japan
Cited by: 3
Author(s): Diyona Putri, Masanori Yokozawa, Toshiro Yamanaka, Adam L. Cronin
Software Mentions: 4
Published: almost 5 years ago

10.3390/ani11092651

SNPs in Sheep: Characterization of Lithuanian Sheep Populations
Cited by: 0
Author(s): Rūta Šveistienė, Miika Tapio
Software Mentions: 4
Published: almost 5 years ago

10.15252/embj.2019104202

Systematic analysis of the <scp>IL</scp> ‐17 receptor signalosome reveals a robust regulatory feedback loop
Cited by: 14
Author(s): Helena Draberova, Sarka Janusova, Daniela Knizkova, Tereza Šemberová, Michaela Přibíková, Andrea Ujevic, Karel Harant, Sofija Knápková, Matouš Hrdinka, Viola Fanfani, Giovanni Stracquadanio, Ales Drobek, Klara Ruppova, Ondřej Štěpánek, Peter Dráber
Software Mentions: 4
Published: about 6 years ago

10.15252/embj.201899559

Phosphoproteomic screening identifies physiological substrates of the <scp>CDKL</scp> 5 kinase
Cited by: 52
Author(s): Iván Muñoz, Michael Morgan, Julien Peltier, Florian Weiland, Mateusz Gregorczyk, Fiona Brown, Thomas Macartney, Rachel Toth, Matthias Trost, John Rouse
Software Mentions: 4
Published: almost 8 years ago

10.15252/emmm.201708428

Comparative proteomics reveals a diagnostic signature for pulmonary head‐and‐neck cancer metastasis
Cited by: 41
Author(s): Hanibal Bohnenberger, Lars Kaderali, Philipp Ströbel, Diego Yepes, Uwe Plessmann, Neekesh V. Dharia, Sha Yao, Carina Heydt, Sabine Merkelbach‐Bruse, Alexander Emmert, Jonatan F. Hoffmann, Julius Bodemeyer, Kirsten Reuter‐Jessen, Anna‐Maria Lois, Leif Hendrik Dröge, Philipp Baumeister, Christoph Walz, Lorenz Biggemann, Roland B. Walter, Björn Häupl, Federico Comoglio, Kuan‐Ting Pan, Sebastian Scheich, Christof Lenz, Stefan Küffer, Felix Bremmer, Julia Kitz, Maren Sitte, Tim Beißbarth, Marc Hinterthaner, Martin Sebastian, Joachim Lotz, Hans‐Ulrich Schildhaus, Hendrik A. Wolff, Bernhard C. Danner, Christian Brandts, Reinhard Büttner, Martin Canis, Kimberly Stegmaier, Hubert Serve, Henning Urlaub, Thomas Oellerich
Software Mentions: 4
Published: almost 8 years ago

10.15252/emmm.201911659

<scp>FBXL</scp> 4 deficiency increases mitochondrial removal by autophagy
Cited by: 34
Author(s): David Alsina, Oleksandr Lytovchenko, Aleksandra Schab, Ilian Atanassov, F. Schober, Min Jiang, Camilla Koolmeister, Anna Wedell, Robert W. Taylor, Anna Wredenberg, Nils-Göran Larsson
Software Mentions: 4
Published: about 6 years ago

10.1186/s12862-020-01635-2

Ecological, genetic and evolutionary drivers of regional genetic differentiation in Arabidopsis thaliana
Cited by: 17
Author(s): Antonio R. Castilla, Belén Méndez‐Vigo, Arnald Marcer, Joaquín Martínez‐Minaya, David Conesa, F. Xavier Picó, Carlos Alonso‐Blanco
Software Mentions: 4
Published: about 6 years ago

10.15252/embr.201846557

Tamoxifen mechanically reprograms the tumor microenvironment via <scp>HIF</scp> ‐1A and reduces cancer cell survival
Cited by: 55
Author(s): Ernesto Cortés, Dariusz Lachowski, Benjamin Robinson, Müge Sarper, Jaakko Teppo, Stephen D. Thorpe, Tyler J Lieberthal, Kenji Iwamoto, David A. Lee, Mariko Okada‐Hatakeyama, Markku Varjosalo, Armando E. del Río Hernández
Software Mentions: 4
Published: over 7 years ago

10.1186/s12862-019-1420-5

Alternated selection mechanisms maintain adaptive diversity in different demographic scenarios of a large carnivore
Cited by: 6
Author(s): Rita Gomes Rocha, Vanessa Magalhães, José V. López‐Bao, W. van der Loo, Luís Llaneza, Francisco Álvares, Pedro J. Esteves, Raquel Godinho
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2021.568660

Transcriptional Repression of MFG-E8 Causes Disturbance in the Homeostasis of Cell Cycle Through DOCK/ZP4/STAT Signaling in Buffalo Mammary Epithelial Cells
Cited by: 5
Author(s): Arvind Verma, Syed Azmal Ali, Parul Singh, Sanjay Kumar, Ashok Kumar Mohanty
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-017-4392-0

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral
Cited by: 36
Author(s): Marie E. Strader, Galina V. Aglyamova, Mikhail V. Matz
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-020-07198-2

GWAS unveils features between early- and late-flowering pearl millets
Cited by: 10
Author(s): Oumar Diack, Ghislain Kanfany, Mame Codou Guèye, Ousmane Sy, Amadou Fofana, Hamidou Tall, Desalegn D. Serba, Leïla Zekraoui, Cécile Berthouly‐Salazar, Yves Vigouroux, Diaga Diouf, Ndjido Ardo Kane
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-020-06820-7

Mining ancient microbiomes using selective enrichment of damaged DNA molecules
Cited by: 6
Author(s): Clemens L. Weiß, Marie-Theres Gansauge, Ayinuer Aximu‐Petri, Matthias Meyer, Hernán A. Burbano
Software Mentions: 4
Published: about 6 years ago

10.1186/s12870-021-02980-0

Genetic diversity structure of western-type carrots
Cited by: 7
Author(s): Katarzyna Stelmach, Alicja Macko-Podgórni, Charlotte J. Allender, Dariusz Grzebelus
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.00311

Modelling dynamics in protein crystal structures by ensemble refinement
Cited by: 242
Author(s): B. Tom Burnley, Pavel V. Afonine, Paul D. Adams, Piet Gros
Software Mentions: 4
Published: over 13 years ago

10.3390/ijerph17186711

Objective Facts or Misleading Hype? Associations between Features of E-Cigarette Marketing and Sales on a Chinese E-Commerce Platform
Cited by: 2
Author(s): Yibei Chen, Shaojing Sun, Xiaoquan Zhao, Han Zhou, Fan Wang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2016.00427

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry
Cited by: 16
Author(s): Potgieter Mg, Kehilwe C. Nakedi, Jon Ambler, Andrew J. M. Nel, Shaun Garnett, Nelson C. Soares, Nicola Mulder, Jonathan M. Blackburn
Software Mentions: 4
Published: over 10 years ago

10.3390/microorganisms7100430

Distribution of Foliicolous Lichen Strigula and Genetic Structure of S. multiformis on Jeju Island, South Korea
Cited by: 2
Author(s): Seung‐Yoon Oh, Jung-Jae Woo, Jae‐Seoun Hur
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9030562

Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Magnaporthe oryzae Species Complex
Cited by: 3
Author(s): Guohua Duan, Jiandong Bao, Xiaomin Chen, Jiahui Xie, Yuchan Liu, Huiquan Chen, Huakun Zheng, Wei Tang, Zonghua Wang
Software Mentions: 4
Published: over 5 years ago

10.1093/molbev/msy023

RADpainter and fineRADstructure: Population Inference from RADseq Data
Cited by: 234
Author(s): Milan Malinsky, Emiliano Trucchi, Daniel J. Lawson, Daniel Falush
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.01410

On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics
Cited by: 6
Author(s): K.C.T. Machado, Suereta Fortuin, Gisele G. Tomazella, André Fonseca, Robin M. Warren, Harald G. Wiker, Sandro J. de Souza, Gustavo Souza
Software Mentions: 4
Published: about 7 years ago

10.1111/mec.13186

Ecological host fitting of <i> <scp>T</scp> rypanosoma cruzi </i> <scp>T</scp> c <scp>I</scp> in <scp>B</scp> olivia: mosaic population structure, hybridization and a role for humans in <scp>A</scp> ndean parasite dispersal
Cited by: 37
Author(s): Louisa A. Messenger, Lineth García, Mathieu Vanhove, Carlos Huaranca, Marinely Bustamante, Mary-Cruz Torrico, Faustino Torrico, Michael A. Miles, Martin S. Llewellyn
Software Mentions: 4
Published: over 11 years ago

10.1111/1755-0998.12567

<i>apex</i> : phylogenetics with multiple genes
Cited by: 22
Author(s): Thibaut Jombart, Frederick I. Archer, Klaus Schliep, Zhian N. Kamvar, Rebecca B. Harris, Emmanuel Paradis, Jérôme Goudet, Hilmar Lapp
Software Mentions: 4
Published: almost 10 years ago

10.1093/gigascience/giy032

A practical tool for maximal information coefficient analysis
Cited by: 53
Author(s): Davide Albanese, Samantha Riccadonna, Claudio Donati, Pietro Franceschi
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.5089

Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci
Cited by: 31
Author(s): Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.5022

Relationship between<i>Acropora millepora</i>juvenile fluorescence and composition of newly established<i>Symbiodinium</i>assemblage
Cited by: 4
Author(s): Kate M. Quigley, Marie E. Strader, Mikhail V. Matz
Software Mentions: 4
Published: about 8 years ago

10.1080/15476286.2019.1621625

NET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution
Cited by: 5
Author(s): Constantine Mylonas, Peter Tessarz
Software Mentions: 4
Published: about 7 years ago

10.3390/plants8100377

Association Mapping Between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids
Cited by: 7
Author(s): Maider Astorkia, M. Rodríguez Hernández, Stéphanie Bocs, Emma Lopez de Armentia, Ana Herrán, Kevin Ponce, Olga León, Shone Morales, Nathalie Quezada, Francisco Orellana, Fahmi Wendra, Zulhermana Sembiring, Dwi Asmono, Enrique Ritter
Software Mentions: 4
Published: almost 7 years ago