10.3390/ijms20225775

Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism
Cited by: 13
Author(s): Lidiane Miotto-Vilanova, Barbara Courteaux, Rosa Padilla, Fanja Rabenoelina, Cédric Jacquard, Christophe Clément, Gilles Comte, Céline Lavire, Essaïd Ait Barka, Isabelle Kerzaon, Lisa Sanchez
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22084026

Metabolic, Organoleptic and Transcriptomic Impact of Saccharomyces cerevisiae Genes Involved in the Biosynthesis of Linear and Substituted Esters
Cited by: 4
Author(s): Philippe Marullo, Marine Trujillo, Rémy Viannais, Lucas Hercman, Sabine Guillaumie, Benoît Colonna-Ceccaldi, Warren Albertin, Jean‐Christophe Barbe
Software Mentions: 4
Published: over 5 years ago

10.3390/ani9060316

The Social Rank of Zoo-Housed Japanese Macaques is a Predictor of Visitor-Directed Aggression
Cited by: 12
Author(s): Jocelyn M. Woods, Stephen R. Ross, Katherine A. Cronin
Software Mentions: 4
Published: about 7 years ago

10.1093/ve/vev004

The effect of ecosystem biodiversity on virus genetic diversity depends on virus species: A study of chiltepin-infecting begomoviruses in Mexico
Cited by: 27
Author(s): Manuel Rodelo-Urrego, Fernando García‐Arenal, Israel Pagán
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.2998

From eggs to bites: do ovitrap data provide reliable estimates of<i>Aedes albopictus</i>biting females?
Cited by: 30
Author(s): Mattia Manica, Roberto Rosà, Alessandra della Torre, Beniamino Caputo
Software Mentions: 4
Published: over 9 years ago

10.1093/cid/ciz1186

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants
Cited by: 33
Author(s): Alaric W. D’Souza, Eshia Moodley-Govender, Bertram M. Berla, Tejas Kelkar, Bin Wang, Xiaoqing Sun, Brodie Daniels, Anna Coutsoudis, Indi Trehan, Gautam Dantas
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.9883

Mayfly emergence production and body length response to hydrology in a tropical lowland stream
Cited by: 4
Author(s): Pablo E. Gutiérrez‐Fonseca, Alonso Ramírez
Software Mentions: 4
Published: almost 6 years ago

10.1007/s11104-019-04012-1

Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield
Cited by: 19
Author(s): Leandro Van Langenhove, Thomas Depaepe, Sara Vicca, Joke Van den Berge, Clément Stahl, Elodie A. Courtois, James T. Weedon, Ifigenia Urbina, Oriol Grau, Dolores Asensio, Josep Peñuelas, Pascal Boeckx, Andreas Richter, Dominique Van Der Straeten, Ivan A. Janssens
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0251820

Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III
Cited by: 5
Author(s): Cora Chalar, Graciela Clivio, Jimena Montagne, Alicia Costábile, Analı́a Lima, Nicolás Papa, Nora Berois, María José Arezo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0068678

Are High-Impact Species Predictable? An Analysis of Naturalised Grasses in Northern Australia
Cited by: 17
Author(s): Rieks D. van Klinken, F. D. Panetta, Shaun R. Coutts
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0246822

Shade, light, and stream temperature responses to riparian thinning in second-growth redwood forests of northern California
Cited by: 12
Author(s): David A. Roon, Jason B. Dunham, Jeremiah D. Groom
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0204510

Ranking stressor impacts on periphyton structure and function with mesocosm experiments and environmental-change forecasts
Cited by: 10
Author(s): David M. Costello, Konrad J. Kulacki, Marie McCarthy, Scott D. Tiegs, Bradley J. Cardinale
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0198849

The invasiveness of Hypochaeris glabra (Asteraceae): Responses in morphological and reproductive traits for exotic populations
Cited by: 8
Author(s): Irene Martín‐Forés, Belén Acosta Gallo, Isabel Castro, Jesús M. de Miguel, Alejandro del Pozo, Miguel Casado
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0252092

Passive acoustic monitoring for detecting the Yellow-bellied Glider, a highly vocal arboreal marsupial
Cited by: 3
Author(s): Desley A. Whisson, Freya McKinnon, Matthew Lefoe, Anthony R. Rendall
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0130954

Reproductive Performance of a Declining Forest Passerine in Relation to Environmental and Social Factors: Implications for Species Conservation
Cited by: 27
Author(s): Alexander Grendelmeier, Raphaël Arlettaz, Michael M. Gerber, Gilberto Pasinelli
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0226529

Predictive sampling effort and species-area relationship models for estimating richness in fragmented landscapes
Cited by: 4
Author(s): Noé U. de la Sancha, Sarah A. Boyle
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.1325

The relative influence of habitat amount and configuration on genetic structure across multiple spatial scales
Cited by: 15
Author(s): Katie L. Millette, Nusha Keyghobadi
Software Mentions: 4
Published: over 11 years ago

10.1111/gcb.14644

A critical review of the impacts of cover crops on nitrogen leaching, net greenhouse gas balance and crop productivity
Cited by: 296
Author(s): Mohamed Abdalla, Astley Hastings, Kun Cheng, Qian Ye, D. R. Chadwick, Mikk Espenberg, Jaak Truu, Robert M. Rees, Pete Smith
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-017-04806-2

Response of Atlantic salmon Salmo salar to temperature and dissolved oxygen extremes established using animal-borne environmental sensors
Cited by: 85
Author(s): Kilian M. Stehfest, Chris Carter, Jaime D. McAllister, D. J. Ross, Jayson M. Semmens
Software Mentions: 4
Published: about 9 years ago

10.1186/s12984-021-00820-8

Brain–computer interface robotics for hand rehabilitation after stroke: a systematic review
Cited by: 76
Author(s): Paul Dominick E. Baniqued, Emily C. Stanyer, Muhammad Awais, Ali Alazmani, Andrew Jackson, Mark Mon-Williams, Faisal Mushtaq, R. Glynn Holt
Software Mentions: 4
Published: over 5 years ago

10.1186/s12711-020-0530-2

SeqBreed: a python tool to evaluate genomic prediction in complex scenarios
Cited by: 7
Author(s): Miguel Pérez‐Enciso, Lino C. Ramírez-Ayala, Laura M. Zingaretti
Software Mentions: 4
Published: over 6 years ago

10.3390/pathogens10060708

Over 100 Years of Rift Valley Fever: A Patchwork of Data on Pathogen Spread and Spillover
Cited by: 21
Author(s): Gebbiena M. Bron, Kathryn Strimbu, Hélène Cecilia, Anita Lerch, Sean M. Moore, Quan Minh Tran, T. Alex Perkins, Quirine A. ten Bosch
Software Mentions: 4
Published: about 5 years ago

10.1038/s42003-021-01840-9

Overcoming barriers to the registration of new plant varieties under the DUS system
Cited by: 9
Author(s): Chin Jian Yang, Joanne Russell, Luke Ramsay, William Thomas, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 5 years ago

10.3390/s20174940

Application of Convolutional Neural Network-Based Feature Extraction and Data Fusion for Geographical Origin Identification of Radix Astragali by Visible/Short-Wave Near-Infrared and Near Infrared Hyperspectral Imaging
Cited by: 19
Author(s): Qinlin Xiao, Xiulin Bai, Pan Gao, Yong He
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-018-0539-8

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
Cited by: 31
Author(s): Jessica K. Jarett, Stephen Nayfach, Mircea Podar, William P. Inskeep, Natalia Ivanova, Jacob Munson-McGee, Frederik Schulz, Mark Young, Zackary J. Jay, Jacob P. Beam, Nikos C. Kyrpides, Rex R. Malmstrom, Ramunas Stepanauskas, Tanja Woyke
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2020.594569

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks
Cited by: 6
Author(s): Isaiah Catalino M. Pabuayon, Ai Kitazumi, Glenn B. Gregorio, Rakesh Kumar Singh, Benildo G. de los Reyes
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu13020377

Feed Composition Differences Resulting from Organic and Conventional Farming Practices Affect Physiological Parameters in Wistar Rats—Results from a Factorial, Two-Generation Dietary Intervention Trial
Cited by: 9
Author(s): Marcin Barański, Dominika Średnicka-Tober, Leonidas Rempelos, Gultakin Hasanaliyeva, Joanna Gromadzka-Ostrowska, Krystyna Skwarło-Sońta, Tomasz Królikowski, Ewa Rembiałkowska, Jana Hajšlová, Věra Schulzová, İsmail Çakmak, Levent Öztürk, Ewelina Hallmann, Chris Seal, Per Ole Iversen, Vanessa Vigar, Carlo Leifert
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/5579736

Glycine-Serine-Threonine Metabolic Axis Delays Intervertebral Disc Degeneration through Antioxidant Effects: An Imaging and Metabonomics Study
Cited by: 9
Author(s): Xiaolin Wu, Chang Liu, Shuai Yang, Nana Shen, Yan Wang, Yi Zhu, Zhaoyang Guo, Sihyung Yang, Dongming Xing, Houxi Li, Bohua Chen, Hongfei Xiang
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12967-020-02698-x

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis
Cited by: 78
Author(s): Xingwang Zhao, Longlong Zhang, Juan Wang, Min Zhang, Zhiqiang Song, Bing Ni, Yi You
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/5550116

An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/6657013

Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
Cited by: 2
Author(s): Guangzhen Wu, Yingkun Xu, Chenglin Han, Zilong Wang, Jiayi Li, Qifei Wang, Xiangyu Che
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms21041337

Combined Analysis of the Metabolome and Transcriptome Identified Candidate Genes Involved in Phenolic Acid Biosynthesis in the Leaves of Cyclocarya paliurus
Cited by: 29
Author(s): Weida Lin, Yueling Li, Qiuwei Lu, Hongfei Lü, Junmin Li
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.55851

Genetic mapping of etiologic brain cell types for obesity
Cited by: 62
Author(s): Pascal Timshel, Jonatan J Thompson, Tune H. Pers
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-95455-z

Evaluation of two highly effective lipid-lowering therapies in subjects with acute myocardial infarction
Cited by: 6
Author(s): Aline Klassen, Andréa Tedesco Faccio, Carolina R. C. Picossi, Priscilla Bento Matos Cruz Derogis, Carlos Eduardo dos Santos Ferreira, Aline Soriano Lopes, Alessandra Sussulini, Elisa Castañeda Santa Cruz, Rafaela Tudela Bastos, Stefanie Caroline Fontoura, Antônio Martins Figueiredo Neto, Marina Franco Maggi Tavares, Maria Cristina Izar, Francisco Antônio Helfenstein Fonseca
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-73948-7

Physical properties of epilithic river biofilm as a new lead to perform pollution bioassessments in overseas territories
Cited by: 3
Author(s): Dominique Monti, Cédric Hubas, Xavier Lourenço, Farid Begarin, Alexandre Haouisée, Laurence Romana, Estelle Lefrançois, Alexandra Jestin, Hélène Budzinski, Nathalie Tapie, Théo Risser, Jean-Louis Mansot, Philippe Keith, Olivier Gros, Pascal J. Lopez, Béatrice Lauga
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-66861-6

Estimation of homeostatic dysregulation and frailty using biomarker variability: a principal component analysis of hemodialysis patients
Cited by: 18
Author(s): Yuichi Nakazato, Tomoko Sugiyama, Rena Ohno, Hirofumi Shimoyama, Diana Leung, Alan A. Cohen, R Kurane, Satoru Hirose, Akira Watanabe, Hiromi Shimoyama
Software Mentions: 4
Published: about 6 years ago

10.1002/ctm2.434

Integrated transcriptional‐phenotypic analysis captures systemic immunomodulation following antiangiogenic therapy in renal cell carcinoma patients
Cited by: 3
Author(s): Darawan Rinchai, Elena Verzoni, Veronica Huber, Agata Cova, Paola Squarcina, Loris De Cecco, Filippo de Braud, Raffaele Ratta, Matteo Dugo, Luca Lalli, Viviana Vallacchi, Monica Rodolfo, Jessica Roelands, Chiara Castelli, Damien Chaussabel, Giuseppe Procopio, Davide Bedognetti, Licia Rivoltini
Software Mentions: 4
Published: about 5 years ago

10.3390/cells9061491

Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs
Cited by: 7
Author(s): Silke Jensen, Emilie Brasset, Elise Parey, Hugues Roest Crollius, Igor V. Sharakhov, Chantal Vaury
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers13122948

DNA Methylation-Based Estimates of Circulating Leukocyte Composition for Predicting Colorectal Cancer Survival: A Prospective Cohort Study
Cited by: 2
Author(s): Xīn Gào, Yan Zhang, Xiangwei Li, Lina Jansen, Elizabeth Alwers, Melanie Bewerunge-Hudler, Matthias Schick, Jenny Chang‐Claude, Michael Hoffmeister, Hermann Brenner
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers12071816

Characterization of Class-3 Semaphorin Receptors, Neuropilins and Plexins, as Therapeutic Targets in a Pan-Cancer Study
Cited by: 16
Author(s): Xiaoli Zhang, Shuai Shao, Lang Li
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers11040561

Expression Profiling of Calcium Channels and Calcium-Activated Potassium Channels in Colorectal Cancer
Cited by: 47
Author(s): İbrahim Şehitoğlu, Hassan Dakik, Christophe Vandier, Romain Chautard, Gilles Paintaud, Frédéric Mazurier, Thierry Lecomte, Maxime Guéguinou, William Raoul
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0252628

Serological profiles of pan-coronavirus-specific responses in COVID-19 patients using a multiplexed electro-chemiluminescence-based testing platform
Cited by: 10
Author(s): Sidhartha Chaudhury, Jack Hutter, Jessica Bolton, Shilpa Hakre, Evelyn Mose, Amy I Wooten, William O'Connell, Joseph Hudak, Shelly J. Krebs, Janice M. Darden, Jason A. Regules, Clinton K. Murray, Kayvon Modjarrad, Paul T. Scott, Sheila A. Peel, Elke S. Bergmann‐Leitner
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0204279

Multiple genomic regions influence root morphology and seedling growth in cultivated sunflower (Helianthus annuus L.) under well-watered and water-limited conditions
Cited by: 19
Author(s): Rishi R. Masalia, Andries A. Temme, Nicole de leon Torralba, John M. Burke
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0047879

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities
Cited by: 281
Author(s): Sandra Kittelmann, Henning Seedorf, William A. Walters, José C. Clemente, Rob Knight, Jeffrey I. Gordon, Peter H. Janssen
Software Mentions: 4
Published: over 13 years ago

10.3390/ani11041024

Effects of Dietary Protein Level on the Gut Microbiome and Nutrient Metabolism in Tilapia (Oreochromis niloticus)
Cited by: 20
Author(s): Changgeng Yang, Ming Jiang, Xin Lü, Wen Huang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.12021

Low winter precipitation, but not warm autumns and springs, threatens mountain butterflies in middle-high mountains
Cited by: 10
Author(s): Martin Konvička, Tomáš Kuras, Jana Lipárová, Vit Slezak, Dita Horázná, Jan Klečka, Irena Klečková
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.101170

Metabolomic signature associated with reproduction-regulated aging in Caenorhabditis elegans
Cited by: 39
Author(s): Qin-Li Wan, Xiaohuo Shi, Jiangxin Liu, Aijun Ding, Yuan-Zhu Pu, Zhigang Li, Gui-Sheng Wu, Huai‐Rong Luo
Software Mentions: 4
Published: over 9 years ago

10.1002/advs.201902862

Gut Microbial Signatures Can Discriminate Unipolar from Bipolar Depression
Cited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: over 6 years ago

10.1097/j.pain.0000000000001880

The impact of bone cancer on the peripheral encoding of mechanical pressure stimuli
Cited by: 12
Author(s): M. Kucharczyk, Kim I. Chisholm, Franziska Denk, Anthony H. Dickenson, Kirsty Bannister, Stephen B. McMahon
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.10458

Polo like kinase 1 expression in cervical cancer tissues generated from multiple detection methods
Cited by: 13
Author(s): Gao Li, Yu‐Yan Pang, Xian-yu Guo, Jingjing Zeng, Zhong-Qing Tang, Dandan Xiong, Xia Yang, Ying Liu, Fuchao Ma, Lang Pan, Zhaoyong Feng
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0216059

The use of bivariate copulas for bias correction of reanalysis air temperature data
Cited by: 6
Author(s): Fakhereh Alidoost, Alfred Stein, Zhongbo Su
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0232736

Using species distribution models to locate the potential cradles of the allopolyploid Gypsophila bermejoi G. López (Caryophyllaceae)
Cited by: 2
Author(s): Miguel de Luis, Julio Álvarez-Jiménez, Francisco Javier Rejos, Carmen Bartolomé
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.7067

Compartmentalized organization of ecological niche occupation in insular invertebrate communities
Cited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0208720

Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologies
Cited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: over 7 years ago

10.3390/v10070388

Co-Infection Patterns in Individual Ixodes scapularis Ticks Reveal Associations between Viral, Eukaryotic and Bacterial Microorganisms
Cited by: 40
Author(s): Shaun T. Cross, Marylee Kapuscinski, Jacquelyn Perino, Bernadette L Maertens, James Weger-Lucarelli, Gregory D. Ebel, Mark D. Stenglein
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.63429

Structural basis for human TRPC5 channel inhibition by two distinct inhibitors
Cited by: 33
Author(s): Kangcheng Song, Mengping Wei, Wenjun Guo, Quan Li, Yimin Kang, Jing-Xiang Wu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-016-0297-9

Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
Cited by: 144
Author(s): Douglas Mahana, Chad M. Trent, Zachary Kurtz, Nicholas A. Bokulich, Thomas Battaglia, Jennifer Chung, Christian L. Müller, Huilin Li, Richard Bonneau, Martin J. Blaser
Software Mentions: 4
Published: about 10 years ago

10.3390/cancers13061409

Detection of Genomically Aberrant Cells within Circulating Tumor Microemboli (CTMs) Isolated from Early-Stage Breast Cancer Patients
Cited by: 8
Author(s): M. Silvestri, Carolina Reduzzi, Giancarlo Feliciello, Marta Vismara, Thomas Schamberger, Cäcilia Köstler, Rosita Motta, Stefano Calza, Cristina Ferraris, Andrea Vingiani, Giancarlo Pruneri, Maria Grazia Daidone, Christoph Klein, Bernhard Polzer, Vera Cappelletti
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12914

Spatial genetic structure in a crustacean herbivore highlights the need for local considerations in Baltic Sea biodiversity management
Cited by: 14
Author(s): Pierre De Wit, Per R. Jonsson, Ricardo T. Pereyra, Marina Panova, Carl André, Kerstin Johannesson
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.7971

Crypsis and convergence: integrative taxonomic revision of the <i>Gehyra australis</i> group (Squamata: Gekkonidae) from northern Australia
Cited by: 9
Author(s): Paul M. Oliver, Audrey Miranda Prasetya, Leonardo G. Tedeschi, Jéssica Fenker, Ryan J. Ellis, Craig Moritz
Software Mentions: 4
Published: over 6 years ago

10.3390/s19224905

Microservice Security Agent Based On API Gateway in Edge Computing
Cited by: 24
Author(s): Rongxu Xu, Wenquan Jin, Do‐Hyeun Kim
Software Mentions: 4
Published: over 6 years ago

10.1038/s41597-020-0460-4

Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
Cited by: 63
Author(s): Colin A. Grambow, Lagnajit Pattanaik, William Green
Software Mentions: 4
Published: about 6 years ago

10.3389/fnins.2018.00236

Computational Testing for Automated Preprocessing 2: Practical Demonstration of a System for Scientific Data-Processing Workflow Management for High-Volume EEG
Cited by: 8
Author(s): Benjamin Ultan Cowley, Jussi Korpela
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0231083

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla
Cited by: 4
Author(s): Yakshi Ortiz, Carla Restrepo, Brayan Vilanova-Cuevas, Eugenio Santiago‐Valentín, Susannah G. Tringe, Filipa Godoy-Vitorino
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.5899

Prey density affects predator foraging strategy in an Antarctic ecosystem
Cited by: 8
Author(s): Karl M. Busdieker, Samantha C. Patrick, Alice M. Trevail, Sébastien Descamps
Software Mentions: 4
Published: over 6 years ago

10.1186/s13054-020-2788-8

Dynamic LTR retrotransposon transcriptome landscape in septic shock patients
Cited by: 5
Author(s): Marine Mommert, Olivier Tabone, Audrey Guichard, Guy Oriol, Elisabeth Cerrato, Mélanie Denizot, Valérie Cheynet, Alexandre Pachot, Alain Lepape, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 4
Published: over 6 years ago

10.1016/j.cell.2020.10.002

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics
Cited by: 57
Author(s): Dylan Kotliar, Aaron E. Lin, James Logue, Travis Hughes, Nadine M. Khoury, Siddharth S. Raju, Marc H. Wadsworth, Han Chen, Jonathan R. Kurtz, Bonnie Dighero-Kemp, Zach B. Bjornson, Nilanjan Mukherjee, Brian Sellers, Nancy Tran, Matthew R. Bauer, Gordon Adams, Ricky Adams, John L. Rinn, Marta Melé, Stephen F. Schaffner, Garry P. Nolan, Kayla G. Barnes, Lisa E. Hensley, David R. McIlwain, Alex K. Shalek, Pardis C. Sabeti, Richard S. Bennett
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0110052

Visualization-Aided Classification Ensembles Discriminate Lung Adenocarcinoma and Squamous Cell Carcinoma Samples Using Their Gene Expression Profiles
Cited by: 15
Author(s): Ao Zhang, Chi Wang, Shiji Wang, Liang Li, Zhongmin Liu, Suyan Tian
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pcbi.1008219

A simple, scalable approach to building a cross-platform transcriptome atlas
Cited by: 12
Author(s): Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim‐Anh Lê Cao, Jarny Choi, Christine A. Wells
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12918-017-0412-6

Detection of statistically significant network changes in complex biological networks
Cited by: 27
Author(s): Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-019-5850-7

Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks
Cited by: 6
Author(s): Kevin B. Walters, Radmir Sarsenov, Wen Siong Too, Roseanna K. Hare, Ian C. Paterson, D Lambert, Stephen Brown, James R. Bradford
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-93097-9

Identification of natural product modulators of Merkel cell carcinoma cell growth and survival
Cited by: 2
Author(s): Emily A. Smith, Natasha T. Hill, Tara Gelb, Khalid A. Garman, Ekaterina I. Goncharova, Heidi R. Bokesch, Chang‐Kwon Kim, Karen L. Wendt, Robert H. Cichewicz, Kirk R. Gustafson, Isaac Brownell, Curtis J. Henrich
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0230490

Year-round temporal stability of a tropical, urban plant-pollinator network
Cited by: 15
Author(s): Alyssa B. Stewart, Pattharawadee Waitayachart
Software Mentions: 4
Published: over 6 years ago

10.1098/rsif.2019.0610

Construction, comparison and evolution of networks in life sciences and other disciplines
Cited by: 10
Author(s): Deisy Morselli Gysi, Katja Nowick
Software Mentions: 4
Published: about 6 years ago

10.1016/j.cels.2018.08.011

Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis
Cited by: 38
Author(s): Lisa K. Kutsche, Deisy Morselli Gysi, Jörg Fallmann, Kerstin Lenk, Rebecca Petri, Anka Swiersy, Simon D. Klapper, Karolina Pircs, Shahryar Khattak, Peter F. Stadler, Johan Jakobsson, Katja Nowick, Volker Busskamp
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-020-59223-9

Long-term observations from Antarctica demonstrate that mismatched scales of fisheries management and predator-prey interaction lead to erroneous conclusions about precaution
Cited by: 79
Author(s): George M. Watters, Jefferson T. Hinke, Christian S. Reiss
Software Mentions: 4
Published: over 6 years ago

10.1038/srep13889

Quantifying the heritability of testicular germ cell tumour using both population-based and genomic approaches
Cited by: 53
Author(s): Kevin Litchfield, Hauke Thomsen, Jonathan S. Mitchell, Jan Sundquist, Richard S. Houlston, Kari Hemminki, Clare Turnbull
Software Mentions: 4
Published: almost 11 years ago

10.1002/jrsm.1167

Automated generation of node‐splitting models for assessment of inconsistency in network meta‐analysis
Cited by: 312
Author(s): Gert van Valkenhoef, Sofia Dias, A E Ades, Nicky J Welton
Software Mentions: 4
Published: almost 11 years ago

10.3389/fonc.2021.552331

Computational Tumor Infiltration Phenotypes Enable the Spatial and Genomic Analysis of Immune Infiltration in Colorectal Cancer
Cited by: 1
Author(s): Henrik Failmezger, Natalie Zwing, Achim Tresch, Konstanty Korski, Fabian Schmich
Software Mentions: 4
Published: over 5 years ago

10.1093/gbe/evw171

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses
Cited by: 49
Author(s): Robert Lanfear, Xia Hua, Dan L. Warren
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2014.00248

The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data
Cited by: 22
Author(s): Hoang Nguyen, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0058241

Allometric Convergence in Savanna Trees and Implications for the Use of Plant Scaling Models in Variable Ecosystems
Cited by: 20
Author(s): Andrew T. Tredennick, Lisa Patrick Bentley, Niall P. Hanan
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pntd.0005568

Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pcbi.1005495

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
Cited by: 89
Author(s): Don Klinkenberg, J.A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pbio.3000562

Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma
Cited by: 6
Author(s): Shoya Iwanami, Kosaku Kitagawa, Hirofumi Ohashi, Yasufumi Asai, Kaho Shionoya, Wakana Saso, Kazane Nishioka, Hisashi Inaba, Shinji Nakaoka, Takaji Wakita, Odo Diekmann, Shingo Iwami, Koichi Watashi
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-015-2001-7

Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Cited by: 23
Author(s): Jeremy Howard, M. Haile‐Mariam, J.E. Pryce, Christian Maltecca
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12862-016-0764-3

The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region
Cited by: 45
Author(s): Michael D. Pirie, E. G. H. Oliver, A. Mugrabi de Kuppler, Berit Gehrke, Nicholas C Le Maitre, Martha Kandziora, Baoheng Du
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0248374

Belief in sexism shift: Defining a new form of contemporary sexism and introducing the belief in sexism shift scale (BSS scale)
Cited by: 5
Author(s): Miriam Katharina Zehnter, Francesca Manzi, Patrick E. Shrout, Madeline E. Heilman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3000443

Machine learning of human plasma lipidomes for obesity estimation in a large population cohort
Cited by: 46
Author(s): Mathias J. Gerl, Christian Klose, Michał A. Surma, Céline Fernandez, Olle Melander, Satu Männistö, Katja Borodulin, Aki S. Havulinna, Veikko Salomaa, Elina Ikonen, Carlo Vittorio Cannistraci, Kai Simons
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pcbi.1007847

Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions
Cited by: 18
Author(s): Gregory L. Medlock, Thomas J. Moutinho, Jason A. Papin
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008208

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
Cited by: 14
Author(s): Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Jaehyung Kim
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1003424

Fast Reconstruction of Compact Context-Specific Metabolic Network Models
Cited by: 200
Author(s): Nikos Vlassis, Maria Pires Pacheco, Thomas Sauter
Software Mentions: 4
Published: over 12 years ago

10.1155/2013/187509

Reconstruction and Analysis of Human Kidney-Specific Metabolic Network Based on Omics Data
Cited by: 8
Author(s): Ai-Di Zhang, Shao‐Xing Dai, Jing‐Fei Huang
Software Mentions: 4
Published: over 13 years ago

10.1186/s12885-020-07147-y

A nomogram model to predict death rate among non-small cell lung cancer (NSCLC) patients with surgery in surveillance, epidemiology, and end results (SEER) database
Cited by: 19
Author(s): Bo Jia, Qiwen Zheng, Jingjing Wang, Hongyan Sun, Jun Zhao, Meina Wu, Tongtong An, Yuyan Wang, Minglei Zhuo, Jianjie Li, Xue Yang, Jia Zhong, Hanxiao Chen, Yujia Chi, Xiaoyu Zhai, Ziping Wang
Software Mentions: 4
Published: about 6 years ago

10.1186/s12885-020-07271-9

Nomogram model for predicting cause-specific mortality in patients with stage I small-cell lung cancer: a competing risk analysis
Cited by: 11
Author(s): Jianjie Li, Qiwen Zheng, Xinghui Zhao, Jun Zhao, Tongtong An, Meina Wu, Yuyan Wang, Minglei Zhuo, Jia Zhong, Xue Yang, Bo Jia, Hanxiao Chen, Zhi Dong, Jingjing Wang, Yujia Chi, Xiaoyu Zhai, Ziping Wang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12885-020-6581-5

Radiotherapy of prostate cancer: impact of treatment characteristics on the incidence of second tumors
Cited by: 10
Author(s): Milly Buwenge, E. Scirocco, Francesco Deodato, G. Macchia, M. Ntreta, S. Bisello, G. Siepe, Savino Cilla, A.R. Alitto, Vincenzo Valentini, Lidia Strigari, Alessio Giuseppe Morganti, S. Cammelli
Software Mentions: 4
Published: over 6 years ago

10.1093/bjsopen/zrab022

Pattern of recurrence in patients with a pathologically complete response after neoadjuvant chemoradiotherapy and surgery for oesophageal cancer
Cited by: 9
Author(s): Marloes Jongh, Ben M Eyck, Leonie R. van der Werf, Eelke Toxopeus, J. Jan B. van Lanschot, Sjoerd M. Lagarde, Ate van der Gaast, J. Nuyttens, Bas P. L. Wijnhoven
Software Mentions: 4
Published: over 5 years ago