10.3390/brainsci11060809

A CNN-Based Autoencoder and Machine Learning Model for Identifying Betel-Quid Chewers Using Functional MRI Features
Cited by: 3
Author(s): Ming-Chou Ho, Hsin-An Shen, Yi-Peng Eve Chang, Jun‐Cheng Weng
Software Mentions: 5
Published: about 5 years ago

10.1186/s13321-015-0101-7

Chemozart: a web-based 3D molecular structure editor and visualizer platform
Cited by: 8
Author(s): Mohamad Mohebifar, Fatemehsadat Sajadi
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0237747

Weighted-persistent-homology-based machine learning for RNA flexibility analysis
Cited by: 4
Author(s): Chi Seng Pun, Brandon Yung Sin Yong, Kelin Xia
Software Mentions: 5
Published: almost 6 years ago

10.3390/genes1010070

Next Generation Sequencing of miRNAs – Strategies, Resources and Methods
Cited by: 111
Author(s): Susanne Motameny, Stefanie Wolters, Peter Nürnberg, Björn Schumacher
Software Mentions: 5
Published: about 16 years ago

10.1186/s12974-017-0834-5

Myeloid C/EBPβ deficiency reshapes microglial gene expression and is protective in experimental autoimmune encephalomyelitis
Cited by: 17
Author(s): Marta Pulido-Salgado, José M. Vidal-Taboada, Gerardo Garcıa-Dıaz Barriga, Joan Serratosa, Tony Valente, Paola Castillo, Jonathan Matalonga, Marco Straccia, Josep M. Canals, Annabel F. Valledor, Carme Solà, Josep Saura
Software Mentions: 5
Published: over 9 years ago

10.3389/fgene.2021.649619

Long Non-coding RNAs: Mechanisms, Experimental, and Computational Approaches in Identification, Characterization, and Their Biomarker Potential in Cancer
Cited by: 21
Author(s): Anshika Chowdhary, Venkata Satagopam, Reinhard Schneider
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-69552-4

Geographic variation in cardiometabolic risk factor prevalence explained by area-level disadvantage in the Illawarra-Shoalhaven region of the NSW, Australia
Cited by: 0
Author(s): Renin Toms, Darren J Mayne, Xiaoqi Feng, Andrew D Bonney
Software Mentions: 5
Published: almost 6 years ago

10.1111/tpj.14769

The Arabidopsis transcription factor AINTEGUMENTA orchestrates patterning genes and auxin signaling in the establishment of floral growth and form
Cited by: 33
Author(s): Beth A. Krizek, Ivory C. Blakley, Yen‐Yi Ho, Nowlan H. Freese, Ann E. Loraine
Software Mentions: 5
Published: about 6 years ago

10.1097/AUD.0000000000000812

Effects of Cognitive Load on Pure-Tone Audiometry Thresholds in Younger and Older Adults
Cited by: 13
Author(s): Antje Heinrich, Melanie A. Ferguson, Sven L. Mattys
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-07107-7

Development and comparison of RNA-sequencing pipelines for more accurate SNP identification: practical example of functional SNP detection associated with feed efficiency in Nellore beef cattle
Cited by: 13
Author(s): Stephanie Lam, J. Zeidan, F. Miglior, Aroa Suárez-Vega, Isabel Gómez-Redondo, Pablo Augusto de Souza Fonseca, Leluo Guan, Sinéad M. Waters, Ángela Cánovas
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-021-04355-6

Fast and exact quantification of motif occurrences in biological sequences
Cited by: 1
Author(s): Mattia Prosperi, Simone Marini, Christina Boucher
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12915-020-00940-y

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Cited by: 14
Author(s): Andra Waagmeester, Egon Willighagen, Andrew I. Su, Martina Kutmon, José Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin Groom, Peter J. Schaap, Lisa M. Verhagen, Jasper J. Koehorst
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1006982

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
Cited by: 83
Author(s): Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Maowen Hu
Software Mentions: 5
Published: over 7 years ago

10.18632/aging.202446

A novel five-lncRNA signature panel improves high-risk survival prediction in patients with cholangiocarcinoma
Cited by: 11
Author(s): Xiaozai Xie, Yi Wang, Sina Zhang, Jialiang Li, Zhengping Yu, Xiwei Ding, Long‐Yun Ye, Peirong Gong, Qing Zhu, Junjian Li, Zi-Yan Chen, Xinfei Yao, Zhifeng Du, Qian Zeng, Hanbin Chen, Zhen Yang, Gang Chen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-35159-z

Taxon-specific responses to different forestry treatments in a temperate forest
Cited by: 28
Author(s): Zoltán Elek, Bence Kovács, Réka Aszalós, Gergely Boros, Ferenc Samu, Flóra Tinya, Péter Ódor
Software Mentions: 5
Published: over 7 years ago

10.1128/mSystems.00230-18

Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of <i>Escherichia coli</i> Diauxic Growth
Cited by: 74
Author(s): A. Succurro, Daniel Segrè, Oliver Ebenhöh
Software Mentions: 5
Published: over 7 years ago

10.3758/s13428-019-01203-7

Cross-modal associations and synesthesia: Categorical perception and structure in vowel–color mappings in a large online sample
Cited by: 24
Author(s): Christine Cuskley, Mark Dingemanse, Simon Kirby, Tessa M. van Leeuwen
Software Mentions: 5
Published: over 7 years ago

10.1111/gcb.15548

Systemic effects of rising atmospheric vapor pressure deficit on plant physiology and productivity
Cited by: 74
Author(s): José R. López, Danielle A. Way, Walid Sadok
Software Mentions: 5
Published: over 5 years ago

10.1016/j.dib.2016.12.014

Data documenting the potential distribution of Aedes aegypti in the center of Veracruz, Mexico
Cited by: 4
Author(s): Israel Estrada‐Contreras, César A. Sandoval-Ruiz, Fredy Severo Mendoza-Palmero, Sergio Ibáñez-Bernal, Miguel Equihua, Griselda Benı́tez
Software Mentions: 5
Published: over 9 years ago

10.1016/j.ebiom.2020.103147

Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes
Cited by: 12
Author(s): Anders Gummesson, Elias Björnson, Linn Fagerberg, Wen Zhong, Abdellah Tebani, Fredrik Edfors, Caroline Schmidt, Annika Lundqvist, Martin Adiels, Fredrik Bäckhed, Jochen M. Schwenk, Per‐Anders Jansson, Mathias Uhlén, Göran Bergström
Software Mentions: 5
Published: over 5 years ago

10.7705/biomedica.4753

Análisis de la variabilidad genética de una muestra de la población de Bogotá: hacia la constitución de un mapa de haplotipos
Cited by: 2
Author(s): Juan David Caicedo, Alejandro Cáceres, Carlos E. Arboleda-Bustos, María Fernanda Mahecha, Jenny Ortega, Gonzalo Arboleda, Humberto Arboleda
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.34077

Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver
Cited by: 51
Author(s): Bryan J. Matthews, David J. Waxman
Software Mentions: 5
Published: about 8 years ago

10.1002/mds.28197

The Parkinson's Disease <scp>Genome‐Wide</scp> Association Study Locus Browser
Cited by: 61
Author(s): Francis P. Grenn, Jonggeol J. Kim, Mary B. Makarious, Hirotaka Iwaki, Anastasia Illarionova, Kajsa Brolin, Jillian H. Kluss, Artur Schumacher-Schuh, Hampton Leonard, Faraz Faghri, Kimberley Billingsley, Lynne Krohn, Ashley Hall, Mónica Díez-Fairén, María Teresa Periñán, Jia Nee Foo, Cynthia Sandor, Caleb Webber, Brian Fiske, J. Raphael Gibbs, Mike A. Nalls, Andrew B. Singleton, Sara Bandrés‐Ciga, Xylena Reed, Cornelis Blauwendraat
Software Mentions: 5
Published: almost 6 years ago

10.1038/tp.2017.177

Genome-wide expression and response to exposure-based psychological therapy for anxiety disorders
Cited by: 15
Author(s): Stephen K. Roberts, Chloe Wong, Gerome Breen, Jonathan R. I. Coleman, Simone de Jong, Peter Jöhren, Robert Keers, Charles Curtis, Sang Hyuck Lee, Jürgen Margraf, Silvia Schneider, Tobias Teismann, André Wannemüller, Kathryn J. Lester, Thalia C. Eley
Software Mentions: 5
Published: almost 9 years ago

10.1002/ece3.4197

Impact of human disturbance on bee pollinator communities in savanna and agricultural sites in Burkina Faso, West Africa
Cited by: 24
Author(s): Katharina Stein, Kathrin Stenchly, Daouda Coulibaly, Alain Pauly, Kangbéni Dimobe, Ingolf Steffan‐Dewenter, Souleymane Konaté, Dethardt Goetze, Stefan Porembski, K. Eduard Linsenmair
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pcbi.1006373

Designing and running an advanced Bioinformatics and genome analyses course in Tunisia
Cited by: 6
Author(s): Fatma Z. Guerfali, Dhafer Laouini, Abdellatif Boudabous, Fredj Tekaia
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pcbi.1006555

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps
Cited by: 53
Author(s): Camden Jansen, Ricardo N. Ramirez, Nicole El-Ali, David Green, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, A Mortazavi
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0083452

Tracking Diet Preferences of Bats Using Stable Isotope and Fatty Acid Signatures of Faeces
Cited by: 35
Author(s): Monika My-Y Lam, Dominik Martin‐Creuzburg, Karl‐Otto Rothhaupt, Kamran Safi, Elizabeth Yohannes, Ioanna Salvarina
Software Mentions: 5
Published: over 12 years ago

10.1186/2047-217X-3-37

Shared data for intensity modulated radiation therapy (IMRT) optimization research: the CORT dataset
Cited by: 68
Author(s): David Craft, Mark Bangert, Tammy M. Long, Dávid Papp, Jan Unkelbach
Software Mentions: 5
Published: over 11 years ago

10.7554/eLife.31683

Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm
Cited by: 36
Author(s): Xinan Yang, Rangarajan D. Nadadur, Catharina R.E. Hilvering, Valerio Bianchi, Michael S. Werner, Stefan R. Mazurek, Margaret Gadek, Karen Shen, Joseph D. Goldman, Leonid Tyan, Jenna C. Bekeny, Johnathon M Hall, Nutishia Lee, Carlos Perez-Cervantes, Ozanna Burnicka-Turek, Kenneth D. Poss, Christopher R. Weber, Wouter de Laat, Alexander J. Ruthenburg, Ivan P. Moskowitz
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0188415

Physiological effects of a novel artificially synthesized antimalarial cyclic peptide: Mahafacyclin B
Cited by: 2
Author(s): Yūkō Fujita, Panpaki Seekaki, Naoya Ogata, Kazuhiro Chiba
Software Mentions: 5
Published: over 8 years ago

10.1007/s10654-020-00636-1

Prediction meets causal inference: the role of treatment in clinical prediction models
Cited by: 43
Author(s): Nan van Geloven, Sonja A Swanson, Chava Ramspek, Kim Luijken, Merel van Diepen, Tim P Morris, Rolf H.H. Groenwold, Hans C. van Houwelingen, Hein Putter, Saskia le Cessie
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0215797

Pelleted-hay alfalfa feed increases sheep wether weight gain and rumen bacterial richness over loose-hay alfalfa feed
Cited by: 12
Author(s): Suzanne L. Ishaq, Medora Lachman, B.A. Wenner, Amy Baeza, Molly Butler, Emily A. Gates, Sarah K. Olivo, Julie Buono Geddes, P. G. Hatfield, Carl J. Yeoman
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2020.00308

Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii
Cited by: 13
Author(s): Guillaume Schwob, Léa Cabrol, Élie Poulin, Julieta Orlando
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1008768

Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Cited by: 1
Author(s): Christof Fehrman, Tyler D. Robbins, C. Daniel Meliza
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-016-1010-4

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index
Cited by: 229
Author(s): Lan Jiang, Huidong Chen, Luca Pinello, Guo‐Cheng Yuan
Software Mentions: 5
Published: about 10 years ago

10.3389/fimmu.2021.627036

Single Cell RNA-Seq and Machine Learning Reveal Novel Subpopulations in Low-Grade Inflammatory Monocytes With Unique Regulatory Circuits
Cited by: 8
Author(s): Jiyoung Lee, Shuo Geng, Song Li, Liwu Li
Software Mentions: 5
Published: over 5 years ago

10.1186/s12880-021-00602-7

Differentiation of brain metastases from small and non-small lung cancers using apparent diffusion coefficient (ADC) maps
Cited by: 3
Author(s): Sebastian Johannes Müller, Eya Khadhraoui, Nicole E. Neef, Christian Riedel, Marielle Ernst
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0183906

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: almost 9 years ago

10.3389/fonc.2021.608608

Current Evidence of the Efficacy and Safety of Neoadjuvant EGFR-TKIs for Patients With Non-small Cell Lung Cancer
Cited by: 5
Author(s): Xiaoshun Shi, Xiaoying Dong, Jianxue Zhai, Xiguang Liu, Da-Yong Lu, Zhen Ni, Hua Wu, Kaican Cai
Software Mentions: 5
Published: about 5 years ago

10.1093/bioinformatics/btaa613

Efficient weighted univariate clustering maps outstanding dysregulated genomic zones in human cancers
Cited by: 19
Author(s): Mingzhou Song, Hua Zhong
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pbio.1002324

Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton
Cited by: 101
Author(s): D. Yvon, Andrew P. Allen, María Cellamare, Matteo Dossena, Kevin J. Gaston, Maria Leitão, José M. Montoya, Daniel C. Reuman, Guy Woodward, Mark Trimmer
Software Mentions: 5
Published: over 10 years ago

10.1016/j.ibmb.2019.04.009

Diet modulates the relationship between immune gene expression and functional immune responses
Cited by: 49
Author(s): Sheena C. Cotter, Catherine E. Reavey, Yamini Tummala, Joanna L Randall, Robert Holdbrook, Fleur Ponton, Stephen J. Simpson, Judith A. Smith, Kenneth Wilson
Software Mentions: 5
Published: about 7 years ago

10.12688/wellcomeopenres.14265.2

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study
Cited by: 37
Author(s): John A. Lees, Michaela Kendall, Julian Parkhill, Caroline Colijn, SD Bentley, Rachel Harris
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-020-64279-8

Compared to conventional, ecological intensive management promotes beneficial proteolytic soil microbial communities for agro-ecosystem functioning under climate change-induced rain regimes
Cited by: 13
Author(s): Martina Lori, Gabin Piton, Sarah Symanczik, Nicolas Legay, L. Brussaard, Sebastian Jaenicke, Eduardo Nascimento, Filipa Reis, José Paulo Sousa, Paul Mäder, Andreas Gattinger, Jean Christophe Clément, Arnaud Foulquier
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.7362

DeepBindRG: a deep learning based method for estimating effective protein–ligand affinity
Cited by: 61
Author(s): Haiping Zhang, Linbu Liao, Konda Mani Saravanan, Peng Yin, Yanjie Wei
Software Mentions: 5
Published: almost 7 years ago

10.1016/j.dib.2020.106472

Dataset of sodium chloride sterile liquid in bottles for intravenous administration and fill level monitoring
Cited by: 2
Author(s): Danilo Pau, Bipin P. Kumar, Prashant Namekar, Gauri Dhande, Luca Simonetta
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-020-02027-x

Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering
Cited by: 19
Author(s): Zhijin Wu, Hao Wu
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.359

Diversity protects plant communities against generalist molluscan herbivores
Cited by: 21
Author(s): Yvonne Fabian, Nadine Sandau, Odile T. Bruggisser, Patrik Kehrli, Alexandre Aebi, Rudolf P. Rohr, Russell E. Naisbit, Louis‐Félix Bersier
Software Mentions: 5
Published: almost 14 years ago

10.1186/1471-2105-10-S10-S5

KA-SB: from data integration to large scale reasoning
Cited by: 3
Author(s): María del Mar Roldán‐García, Ismael Navas‐Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José F. Aldana‐Montes
Software Mentions: 5
Published: almost 17 years ago

10.1186/s12983-016-0178-5

Development of foraging skills in two orangutan populations: needing to learn or needing to grow?
Cited by: 36
Author(s): Caroline Schuppli, Sofia Forss, Ellen Meulman, Nicole Zweifel, Kevin C. Lee, Evasari Rukmana, Erin R. Vogel, Maria A. van Noordwijk, Carel P. van Schaik
Software Mentions: 5
Published: almost 10 years ago

10.1002/eap.1946

Urban meadows as an alternative to short mown grassland: effects of composition and height on biodiversity
Cited by: 59
Author(s): Briony A. Norton, Gary D. Bending, Rachel Rachel Clark, Ronald Corstanje, Nigel Dunnett, Karl L. Evans, Darren R. Grafius, Emily Gravestock, Samuel M. Grice, J. Arthur Harris, Sally Hilton, Helen Hoyle, E. C. Lim, Theresa G. Mercer, Mark Pawlett, Oliver L. Pescott, Jonathan Richards, Georgina E. Southon, Philip H. Warren
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-018-33276-3

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
Cited by: 5
Author(s): Laura Bennett, Mary Howell, Danish Memon, Chris Smowton, Cong Zhou, Crispin Miller
Software Mentions: 5
Published: almost 8 years ago

10.7554/eLife.25125

Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression
Cited by: 111
Author(s): Daniel Andergassen, Christoph P. Dotter, D. Wenzel, Verena Sigl, Philipp C. Bammer, Markus Muckenhuber, Daniela Mayer, Tomasz M. Kuliński, Hans-Christian Theussl, Josef Penninger, Christoph Bock, Denise P. Barlow, Florian M. Pauler, Quanah J. Hudson
Software Mentions: 5
Published: almost 9 years ago

10.1111/1462-2920.15484

Effect of salinity on cable bacteria species composition and diversity
Cited by: 19
Author(s): Ann‐Sofie Dam, Ian P. G. Marshall, Nils Risgaard‐Petersen, Laurine D. W. Burdorf, Ugo Marzocchi
Software Mentions: 5
Published: about 5 years ago

10.1186/s12915-021-01001-8

Evolution of the codling moth pheromone via an ancient gene duplication
Cited by: 9
Author(s): Jean-Marc Lassance, Bao‐Jian Ding, Christer Löfstedt
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-2861-y

miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules
Cited by: 31
Author(s): Junpeng Zhang, Lin Liu, Taosheng Xu, Yong Xie, Chunwen Zhao, Jiuyong Li, Thuc Duy Le
Software Mentions: 5
Published: about 7 years ago

10.1093/aob/mcu034

Influence of the variation of geometrical and topological traits on light interception efficiency of apple trees: sensitivity analysis and metamodelling for ideotype definition
Cited by: 43
Author(s): David Da Silva, Liqi Han, Robert Faivre, Evelyne Costes
Software Mentions: 5
Published: over 12 years ago

10.3390/cancers13123010

Sensitivity and Specificity of Human Papillomavirus (HPV) 16 Early Antigen Serology for HPV-Driven Oropharyngeal Cancer: A Systematic Literature Review and Meta-Analysis
Cited by: 17
Author(s): Julia Hibbert, Gordana Halec, Dan Baaken, Tim Waterboer, Nicole Brenner
Software Mentions: 5
Published: about 5 years ago

10.3389/fninf.2019.00053

A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images
Cited by: 52
Author(s): Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi
Software Mentions: 5
Published: almost 7 years ago

10.1186/s40168-018-0543-z

Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
Cited by: 40
Author(s): Jeffrey M. Bender, Fan Li, Helty Adisetiyo, David Lee, Sara Zabih, Long Hung, Thomas A. Wilkinson, Pia S. Pannaraj, Rosemary C. She, Jennifer Dien Bard, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12864-021-07872-z

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: about 5 years ago

10.1016/j.immuni.2019.05.002

Polychromic Reporter Mice Reveal Unappreciated Innate Lymphoid Cell Progenitor Heterogeneity and Elusive ILC3 Progenitors in Bone Marrow
Cited by: 85
Author(s): Jennifer Walker, Paula A. Clark, Alastair Crisp, Jillian L. Barlow, Aydan C H Szeto, Ana Carolina Franco Ferreira, Batika M. J. Rana, Helen E. Jolin, Noé Rodríguez-Rodríguez, Meera Sivasubramaniam, Richard Pannell, James Cruickshank, Maria Daly, Liora Haim-Vilmovsky, Sarah A. Teichmann, Andrew N. J. McKenzie
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: almost 5 years ago

10.1098/rsos.180707

Decomposing the effects of ocean environments on predator–prey body-size relationships in food webs
Cited by: 6
Author(s): Tomoya Dobashi, Midori Iida, Kazuhiro Takemoto
Software Mentions: 5
Published: about 8 years ago

10.3390/genes11070792

Integrating Deep Supervised, Self-Supervised and Unsupervised Learning for Single-Cell RNA-seq Clustering and Annotation
Cited by: 21
Author(s): Liang Chen, Yuyao Zhai, Qiuyan He, Weinan Wang, Minghua Deng
Software Mentions: 5
Published: about 6 years ago

10.3390/healthcare9040422

Identification of People with Diabetes Treatment through Lipids Profile Using Machine Learning Algorithms
Cited by: 2
Author(s): Vanessa Alcalá-Rmz, Carlos E. Galván-Tejada, Alejandra García-Hernández, Adán Valladares‐Salgado, Miguel Cruz, Jorge I. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Hamurabi Gamboa-Rosales
Software Mentions: 5
Published: over 5 years ago

10.1186/s12974-019-1454-z

Balance between innate versus adaptive immune system and the risk of dementia: a population-based cohort study
Cited by: 46
Author(s): Kimberly D. van der Willik, Lana Fani, Dimitris Rizopoulos, Silvan Licher, Jesse Fest, Sanne B. Schagen, Mohammad Kamran Ikram, M. Arfan Ikram
Software Mentions: 5
Published: over 7 years ago

10.1002/2211-5463.12543

Sulforaphane‐induced metabolomic responses with epigenetic changes in estrogen receptor positive breast cancer cells
Cited by: 17
Author(s): Shuyuan Cao, Li Wang, Zhan Zhang, Feng Chen, Qian Wu, Lei Li
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-020-02129-6

sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression
Cited by: 16
Author(s): Yuan He, Surya B. Chhetri, Marios Arvanitis, Kaushik Srinivasan, François Aguet, Kristin Ardlie, Alvaro N. Barbeira, Rodrigo Bonazzola, Hae Kyung Im, Christopher D. Brown, Alexis Battle
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpsyg.2021.701305

The Effect of Loneliness on Cognitive Functioning Among Healthy Individuals in Mid- and Late-Adulthood: Evidence From the Canadian Longitudinal Study on Aging (CLSA)
Cited by: 5
Author(s): Aki-Juhani Kyröläinen, Victor Kuperman
Software Mentions: 5
Published: almost 5 years ago

10.1186/1752-0509-1-27

Non-linear dimensionality reduction of signaling networks
Cited by: 18
Author(s): Sergii Ivakhno, J. Douglas Armstrong
Software Mentions: 5
Published: about 19 years ago

10.1038/srep20174

Spatial isolation and environmental factors drive distinct bacterial and archaeal communities in different types of petroleum reservoirs in China
Cited by: 53
Author(s): Peike Gao, Huimei Tian, Yansen Wang, Yanshu Li, Yan Li, Jinxia Xie, Bing Zeng, Jiefang Zhou, Guoqiang Li, Ting Ma
Software Mentions: 5
Published: over 10 years ago

10.1136/bmj.l1945

Diagnosis of obstructive coronary artery disease using computed tomography angiography in patients with stable chest pain depending on clinical probability and in clinically important subgroups: meta-analysis of individual patient data
Cited by: 85
Author(s): Robert Haase, Peter Schlattmann, Pascal Guéret, Daniele Andreini, Gianluca Pontone, Hatem Alkadhi, Jörg Hausleiter, Mario J. García, Sebastian Leschka, Willem B. Meijboom, Elke Zimmermann, Bernhard Gerber, U. Joseph Schoepf, Abbas Arjmand Shabestari, Bjarne Linde Nørgaard, Matthijs F.L. Meijs, Akira Sato, Kristian Altern Øvrehus, Axel Cosmus Pyndt Diederichsen, Shona M.M. Jenkins, Juhani Knuuti, Ashraf Hamdan, Bjørn Halvorsen, Vladimir Mendoza-Rodríguez, Carlos Eduardo Rochitte, Johannes Rixe, Yung Liang Wan, C. Langer, Nuno Bettencourt, Eugenio Martuscelli, Saïd Ghostine, Ronny R. Buechel, Konstantin Nikolaou, Hans Mickley, Lin Yang, Zhaqoi Zhang, Marcus Y Chen, David A. Halon, Matthias Rief, Kai Sun, Beatrice Hirt-Moch, Hiroyuki Niinuma, Roy Marcus, Simone Muraglia, Réda Jakamy, Benjamin J.W. Chow, Philipp A. Kaufmann, Jean‐Claude Tardif, César Higa Nomura, Klaus F. Kofoed, Jean Pierre Laissy, Armin Arbab‐Zadeh, Kakuya Kitagawa, Roger J. Laham, Masahiro Jinzaki, John Hoe, Frank J. Rybicki, Arthur J. Scholte, Narinder Paul, Swee Yaw Tan, Kunihiro Yoshioka, Robert Röhle, Georg M. Schuetz, Sabine Schueler, Maria H. Coenen, Viktoria Wieske, Stephan Achenbach, Matthew J. Budoff, Michael Laule, David E. Newby, Marc Dewey
Software Mentions: 5
Published: about 7 years ago

10.1186/2047-217X-1-3

Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers
Cited by: 40
Author(s): Gareth A. Wilson, Pawandeep Dhami, Andrew Feber, Daniel Cortázar, Yuka Suzuki, Reiner Schulz, Primo Schär, Stephan Beck
Software Mentions: 5
Published: about 14 years ago

10.1038/s41598-019-45950-1

The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0229881

Impacts of climate change on agro-climatic suitability of major food crops in Ghana
Cited by: 38
Author(s): Abel Chemura, Bernhard Schauberger, Christoph Gornott
Software Mentions: 5
Published: about 6 years ago

10.1111/eva.12357

Population genomics of the Anthropocene: urbanization is negatively associated with genome‐wide variation in white‐footed mouse populations
Cited by: 97
Author(s): Jason Munshi‐South, Christine P. Zolnik, S. E. Harris
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-018-27047-3

Close inbreeding and low genetic diversity in Inner Asian human populations despite geographical exogamy
Cited by: 17
Author(s): Nina Marchi, Philippe Mennecier, Myriam Georges, Sophie Lafosse, Tatyana Hegay, Choduraa Dorzhu, Boris Chichlo, Laure Ségurel, Évelyne Heyer
Software Mentions: 5
Published: about 8 years ago

10.1107/S1399004714028132

FEM: feature-enhanced map
Cited by: 155
Author(s): Pavel V. Afonine, Nigel W. Moriarty, Marat Mustyakimov, Oleg Sobolev, Thomas C. Terwilliger, Dušan Turk, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-021-81297-2

CROP: a CRISPR/Cas9 guide selection program based on mapping guide variants
Cited by: 3
Author(s): Victor Aprilyanto, Redi Aditama, Zulfikar Achmad Tanjung, Condro Utomo, Tony Liwang
Software Mentions: 5
Published: over 5 years ago

10.2196/14609

Hospital-Based Back Surgery: Geospatial-Temporal, Explanatory, and Predictive Models
Cited by: 5
Author(s): Lawrence V. Fulton, Clemens Scott Kruse
Software Mentions: 5
Published: over 6 years ago

10.1093/conphys/coaa119

Seasonal variation of health in Asian elephants
Cited by: 2
Author(s): Diogo Santos, Vérane Berger, Robin Cristofari, Win Htut, U Kyaw Nyein, Htoo Htoo Aung, Sophie Reichert, Virpi Lummaa
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.49044

NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress
Cited by: 22
Author(s): Dongdong Han, Lars Schomacher, Katrin M. Schüle, Medhavi Mallick, Michael U. Musheev, Emil Karaulanov, Laura Krebs, Annika von Seggern, Christof Niehrs
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0238648

The intestinal microbiome is a co-determinant of the postprandial plasma glucose response
Cited by: 6
Author(s): Nadja B Søndertoft, Josef Korbinian Vogt, Manimozhiyan Arumugam, Mette Kristensen, Rikke Juul Gøbel, Yong Fan, Liwei Lyu, Martin Iain Bahl, Carsten Eriksen, Lars Ängquist, Hanne Frøkiær, Tue H. Hansen, Susanne Brix, Henrik Bjørn Nielsen, Henrik Vestergaard, Ramneek Gupta, Tine Rask Licht, Lotte Lauritzen, Oluf Pedersen
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-021-07924-4

Transcriptomic analysis to elucidate the effects of high stocking density on grass carp (Ctenopharyngodon idella)
Cited by: 10
Author(s): Yan He, Hongyan Yu, Hongling Zhao, Hua Zhu, Qingjing Zhang, Anqi Wang, Yubang Shen, Xiaoyan Xu, Jiale Li
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0227169

Effects of land-use change and related pressures on alien and native subsets of island communities
Cited by: 11
Author(s): Katia Sánchez-Ortiz, Kara Taylor, Adriana De Palma, Franz Essl, Wayne Dawson, Holger Kreft, Jan Pergl, Petr Pyšek, Mark van Kleunen, Patrick Weigelt, Andy Purvis
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0140761

Relation between Water Balance and Climatic Variables Associated with the Geographical Distribution of Anurans
Cited by: 25
Author(s): Braz Titon, Fernando Ribeiro Gomes
Software Mentions: 5
Published: almost 11 years ago

10.1534/g3.120.401452

Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality
Cited by: 10
Author(s): Mariem Nsibi, Barbara Gouble, Sylvie Bureau, Timothée Flutre, Christopher Sauvage, Jean‐Marc Audergon, Jean‐Luc Regnard
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0215987

Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data
Cited by: 18
Author(s): Yu Kong, Deepa Rastogi, Cathal Seoighe, John M. Greally, Masako Suzuki
Software Mentions: 5
Published: about 7 years ago

10.1002/ece3.6650

A landscape‐scale assessment of the relationship between grassland functioning, community diversity, and functional traits
Cited by: 7
Author(s): Hanneke van ‘t Veen, Loïc Chalmandrier, Nadine Sandau, Michael P. Nobis, Patrice Descombes, Achilleas Psomas, Yann Hautier, Loïc Pellissier
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12935-021-02042-3

Derivation and validation of a lipid-covered prognostic model for mature T-cell lymphomas
Cited by: 5
Author(s): Tianshi Lü, Lei Shi, Guanggang Shi, Yin Cai, Shunfeng Hu, Jiarui Liu, Shuai Ren, Xiangxiang Zhou, Xin Wang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0170763

Diversity of Guilds of Amphibian Larvae in North-Western Africa
Cited by: 8
Author(s): Daniel Escoriza, Jihène Ben Hassine
Software Mentions: 5
Published: over 9 years ago

10.1111/eva.12905

Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Cited by: 21
Author(s): Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2016.00853

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes
Cited by: 39
Author(s): Zachary T. Aanderud, Joshua C. Vert, Jay T. Lennon, Tylan W. Magnusson, Donald P. Breakwell, Alan R. Harker
Software Mentions: 5
Published: about 10 years ago

10.15252/msb.20177608

Landscape of nuclear transport receptor cargo specificity
Cited by: 79
Author(s): Marie‐Therese Mackmull, Bernd Klaus, Ivonne Heinze, Manopriya Chokkalingam, Andreas Beyer, Robert B. Russell, Alessandro Ori, Martin Beck
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.9235

Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0164532

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy
Cited by: 23
Author(s): Jolly Chatterjee, Jacqueline Dionora, Abigail Elmido-Mabilangan, Samart Wanchana, Vivek Thakur, Anindya Bandyopadhyay, D. S. Brar, W. Paul Quick
Software Mentions: 5
Published: over 9 years ago

10.3389/fpls.2019.00511

Activity in the Arbuscular Mycorrhizal Hyphosphere Warning Neighbouring Plants
Cited by: 8
Author(s): Carmina Cabral, Bernd Wollenweber, Carla António, Sabine Ravnskov
Software Mentions: 5
Published: over 7 years ago

10.1186/s13321-014-0044-4

InCHlib – interactive cluster heatmap for web applications
Cited by: 45
Author(s): Ctibor Škuta, Petr Bartůněk, Daniel Svozil
Software Mentions: 5
Published: almost 12 years ago