10.1371/journal.pbio.1002585

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process
Cited by: 192
Author(s): Richard Angélique, Boullu Loïs, Ulysse Herbach, Bonnafoux Arnaud, Valérie Morin, Elodie Vallin, Anissa Guillemin, Nan Gao, Gunawan Rudiyanto, Jérémie Cosette, Ophélie Arnaud, Jean-Jacques Kupiec, Thibault Espinasse, Sandrine Gonin-Giraud, Olivier Gandrillon
Software Mentions: 5
Published: over 9 years ago

10.1093/scan/nsaa093

Body sway predicts romantic interest in speed dating
Cited by: 14
Author(s): Andrew Chang, Haley E. Kragness, Wei Tsou, Daniel J. Bosnyak, Anja Thiede, Laurel J. Trainor
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41396-019-0518-5

Density-dependent oxylipin production in natural diatom communities: possible implications for plankton dynamics
Cited by: 18
Author(s): Ennio Russo, Giuliana d’Ippolito, Angelo Fontana, Diana Sarno, Domenico D’Alelio, Greta Busseni, Adrianna Ianora, Eric von Elert, Ylenia Carotenuto
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12966-019-0894-2

Do associations of sex, age and education with transport and leisure-time physical activity differ across 17 cities in 12 countries?
Cited by: 29
Author(s): Josef Mitáš, Ester Cerin, Rodrigo Siqueira Reis, Terry L. Conway, Kelli L. Cain, Marc A. Adams, Grant Schofield, Olga L. Sarmiento, Lars Breum Christiansen, Rachel Davey, Deborah Salvo, Rosario Orzanco-Garralda, Duncan J. Macfarlane, Adriano Akira Ferreira Hino, Ilse De Bourdeaudhuij, Neville Owen, Delfien Van Dyck, James F. Sallis
Software Mentions: 5
Published: over 6 years ago

10.2478/hukin-2014-0067

Interaction Between ACE I/D and ACTN3 R557X Polymorphisms in Polish Competitive Swimmers
Cited by: 22
Author(s): Agata Grenda, Agata Leońska-Duniec, Mariusz Kaczmarczyk, Krzysztof Ficek, Paweł Król, Paweł Cięszczyk, Piotr Żmijewski
Software Mentions: 5
Published: almost 12 years ago

10.1099/mgen.0.000271

A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network
Cited by: 5
Author(s): Charles H. D. Williamson, Nathan E. Stone, Amalee E. Nunnally, Heidie Hornstra, David M. Wagner, Chandler C. Roe, Adam J. Vazquez, Nivedita Nandurkar, Jacob Vinocur, Joel Terriquez, John D. Gillece, Jason Travis, Darrin Lemmer, Paul Keim, Jason W. Sahl
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.3720

Atropos: specific, sensitive, and speedy trimming of sequencing reads
Cited by: 168
Author(s): John P. Didion, Marcel Martin, Francis S. Collins
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.2064

Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico
Cited by: 13
Author(s): Patricia Vélez, Jaime Gasca-Pineda, Edmundo Rosique-Gil, Luis E. Eguiarte, Laura Espinosa-Asuar, Valeria Souza
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0220436

Affect regulation training reduces symptom severity in depression – A randomized controlled trial
Cited by: 28
Author(s): Matthias Berking, Eva Eichler, Maike Luhmann, Alice Diedrich, Wolfgang Hiller, Winfried Rief
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-019-43747-w

Social hierarchy position in female mice is associated with plasma corticosterone levels and hypothalamic gene expression
Cited by: 54
Author(s): Cait M. Williamson, Won Lee, Alexandra R DeCasien, Alesi Lanham, Russell D. Romeo, James P. Curley
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.9235

Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: about 6 years ago

10.1111/eva.12357

Population genomics of the Anthropocene: urbanization is negatively associated with genome‐wide variation in white‐footed mouse populations
Cited by: 97
Author(s): Jason Munshi‐South, Christine P. Zolnik, S. E. Harris
Software Mentions: 5
Published: over 10 years ago

10.1111/eva.12905

Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Cited by: 21
Author(s): Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms20020296

High-Throughput Omics and Statistical Learning Integration for the Discovery and Validation of Novel Diagnostic Signatures in Colorectal Cancer
Cited by: 30
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Tran Diem Nghi, Sang Jun Yoon, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0197386

A bioavailable strontium isoscape for Western Europe: A machine learning approach
Cited by: 105
Author(s): Clément P. Bataille, Isabella C.C. von Holstein, Jason E. Laffoon, Malte Willmes, Xiao Ming Liu, Gareth R. Davies
Software Mentions: 5
Published: about 8 years ago

10.1111/1365-2656.12055

Male reproductive strategy explains spatiotemporal segregation in brown bears
Cited by: 110
Author(s): Sam M. J. G. Steyaert, Jonas Kindberg, Jon E. Swenson, Andreas Zedrosser
Software Mentions: 5
Published: over 13 years ago

10.15252/embj.2019103852

Grad‐seq in a Gram‐positive bacterium reveals exonucleolytic <scp>sRNA</scp> activation in competence control
Cited by: 47
Author(s): Jens Hör, Geneviève Garriss, Silvia Di Giorgio, Lisa-Marie Hack, Jens T. Vanselow, Konrad U. Förstner, Andreas Schlösser, Birgitta Henriques‐Normark, Jörg Vogel
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1005642

Learning infectious disease epidemiology in a modern framework
Cited by: 3
Author(s): Andreas Handel
Software Mentions: 5
Published: over 8 years ago

10.3390/cancers13051097

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer
Cited by: 10
Author(s): Martina K. Zowada, Stephan M. Tirier, Sebastian M. Dieter, Teresa G Krieger, Ava Oberlack, Robert Lorenz Chua, Mario Huerta, Foo Wei Ten, Karin Laaber, Jeongbin Park, Katharina Jechow, Torsten Müller, Mathias Kalxdorf, Mark Kriegsmann, Katharina Kriegsmann, Friederike Herbst, Jeroen Krijgsveld, Martin Schneider, Roland Eils, Hanno Glimm, Christian Conrad, Claudia R. Ball
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0244363

Backbone: An R package for extracting the backbone of bipartite projections
Cited by: 20
Author(s): Rachel Domagalski, Zachary P. Neal, Bruce E. Sagan
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.64940

DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics
Cited by: 32
Author(s): Vivian Tam, Peikai Chen, Anita Yee, Nestor Solis, Théo Klein, Mateusz Kudelko, Rakesh Sharma, Wing‐Lok Chan, Christopher M. Overall, Lisbet Haglund, Pak C. Sham, Kathryn S.E. Cheah, Danny Chan
Software Mentions: 5
Published: over 5 years ago

10.1093/bioinformatics/btx139

Estimating gene regulatory networks with pandaR
Cited by: 15
Author(s): Daniel Schlauch, Joseph N. Paulson, A. E. Young, Kimberly Glass, John Quackenbush
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0188512

Wrapped: An R package for circular data
Cited by: 8
Author(s): Saralees Nadarajah, Yuanyuan Zhang
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.ppat.1009443

Bacteria primed by antimicrobial peptides develop tolerance and persist
Cited by: 33
Author(s): Alexandro Rodríguez‐Rojas, Desiree Y. Baeder, Paul R. Johnston, Roland R. Regoes, Jens Rolff
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2014.00362

Patterns of diversification amongst tropical regions compared: a case study in Sapotaceae
Cited by: 31
Author(s): Kate Armstrong, Graham N. Stone, James A. Nicholls, Eugenio Valderrama, Arne A. Anderberg, Jenny E. E. Smedmark, Laurent Gautier, Yamama Naciri, Richard I. Milne, James E. Richardson
Software Mentions: 5
Published: over 11 years ago

10.1111/eva.12647

Population genomics of the introduced and cultivated Pacific kelp<i>Undaria pinnatifida</i>: Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs
Cited by: 43
Author(s): Jaromir Guzinski, Marion Ballenghien, Claire Daguin‐Thiébaut, Laurent Lévêque, Frédérique Viard
Software Mentions: 5
Published: about 8 years ago

10.1534/g3.119.400560

Genome Size Evolution Differs Between<i>Drosophila</i>Subgenera with Striking Differences in Male and Female Genome Size in<i>Sophophora</i>
Cited by: 6
Author(s): Carl E. Hjelmen, Heath Blackmon, Valerie Renee Holmes, Crystal Burrus, J. Spencer Johnston
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 6 years ago

10.1111/eva.12699

Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: almost 8 years ago

10.1111/eva.13219

Whole genome genotyping reveals discrete genetic diversity in north‐east Atlantic maerl beds
Cited by: 3
Author(s): Tom L. Jenkins, Marie‐Laure Guillemin, Cornelia Simon-Nutbrown, Heidi L. Burdett, Jamie R. Stevens, Viviana Peña
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0174484

Street trees reduce the negative effects of urbanization on birds
Cited by: 80
Author(s): João Carlos Pena, Felipe Martello, Milton Cézar Ribeiro, Richard P. Armitage, Robert J. Young, Marcos Rodrigues
Software Mentions: 5
Published: over 9 years ago

10.18632/aging.203121

Identification of microenvironment related potential biomarkers of biochemical recurrence at 3 years after prostatectomy in prostate adenocarcinoma
Cited by: 9
Author(s): Xiaoru Sun, Lu Wang, Hongkai Li, Chuandi Jin, Yuanyuan Yu, Lei Hou, Xinhui Liu, Yifan Yu, Ran Yan, Fuzhong Xue
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-019-5806-y

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species
Cited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: about 7 years ago

10.1099/mgen.0.000050

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
Cited by: 44
Author(s): Mark B. Schultz, Duy Pham Thanh, Nhu Tran Do Hoan, Ryan R. Wick, Danielle J. Ingle, Jane Hawkey, D.J. Edwards, Johanna J. Kenyon, Nguyen Phu Huong Lan, James I. Campbell, Guy Thwaites, Nguyen Thi Khanh Nhu, Ruth M. Hall, Alexandre Fournier‐Level, Stephen Baker, Kathryn E. Holt
Software Mentions: 5
Published: over 10 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0255598

A Bayesian approach to reveal the key role of mask wearing in modulating projected interpersonal distance during the first COVID-19 outbreak
Cited by: 20
Author(s): Matteo P. Lisi, Marina Scattolin, Martina Fusaro, Salvatore Maria Aglioti
Software Mentions: 5
Published: almost 5 years ago

10.1093/molbev/msaa309

A New Catalog of Structural Variants in 1,301 <i>A. thaliana</i> Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense Response Genes
Cited by: 22
Author(s): Mehmet Göktay, Andrea Fulgione, Angela M. Hancock
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9368

Tip dating with fossil sites and stratigraphic sequences
Cited by: 7
Author(s): Benedict King, Martin Rücklin
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-019-45950-1

The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: about 7 years ago

10.1016/j.bbapap.2013.02.032

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective
Cited by: 67
Author(s): Yasset Perez‐Riverol, Rui Wang, Henning Hermjakob, Markus Müller, Vladimir Vesada, Juan Antonio Vizcaíno
Software Mentions: 5
Published: over 12 years ago

10.3390/v12091027

Novel Circoviruses Detected in Feces of Sonoran Felids
Cited by: 8
Author(s): Natalie Payne, Simona Kraberger, Rafaela S. Fontenele, Kara Schmidlin, Melissa Bergeman, Ivonne Cassaigne, Melanie Culver, Arvind Varsani, Koenraad Van Doorslaer
Software Mentions: 5
Published: almost 6 years ago

10.1128/mSphere.00738-20

Genomic Epidemiology and Evolution of <i>Escherichia coli</i> in Wild Animals in Mexico
Cited by: 14
Author(s): Robert S. Murphy, Martin Palm, Ville Mustonen, Jonas Warringer, Anne Farewell, Leopold Parts, Danesh Moradigaravand
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-021-02236-5

Sex, age, and parental harmonic convergence behavior affect the immune performance of Aedes aegypti offspring
Cited by: 7
Author(s): Christine M Reitmayer, Ashutosh K. Pathak, Laura C. Harrington, Melinda A. Brindley, Lauren J. Cator, Courtney C. Murdock
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0222527

Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2021.624259

Galaxy and MEAN Stack to Create a User-Friendly Workflow for the Rational Optimization of Cancer Chemotherapy
Cited by: 4
Author(s): Jorge Guerra Pires, Gilberto Ferreira da Silva, Thomas Weyssow, Alessandra Jordano Conforte, Dante Pagnoncelli, Fabrício Silva, Nicolas Carels
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7208

No evidence for negative impacts of acute sulfoxaflor exposure on bee olfactory conditioning or working memory
Cited by: 38
Author(s): Harry Siviter, A. Don Scott, Grégoire Pasquier, Christopher D. Pull, Mark J. F. Brown, Ellouise Leadbeater
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0204391

Aseptic loosening after total hip arthroplasty and the risk of cardiovascular disease: A nested case-control study
Cited by: 0
Author(s): Agata Rysinska, Olof Sköldenberg, Anne Garland, Ola Rolfson, Sara Aspberg, Thomas Eisler, Göran Garellick, Andreas M. Stark, Nils P Hailer, Max Gordon
Software Mentions: 5
Published: over 7 years ago

10.3390/insects12010072

Comparison of New Kairomone-Based Lures for Cydia pomonella (Lepidoptera: Tortricidae) in Italy and USA
Cited by: 10
Author(s): Michele Preti, A. L. Knight, Riccardo Favaro, Esteban Basoalto, Marco Tasin, Sergio Angeli
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0089632

Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes
Cited by: 85
Author(s): Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson
Software Mentions: 5
Published: over 12 years ago

10.1186/s12885-021-08647-1

Using a machine learning approach to identify key prognostic molecules for esophageal squamous cell carcinoma
Cited by: 12
Author(s): Meng-Xiang Li, Xiaomeng Sun, Weigang Cheng, Han‐Li Ruan, Ke Liu, Ci Pan, Hai-Jun Xu, Shegan Gao, Xiaoshan Feng, Yi-Jun Qi
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.574

Physical disturbance shapes vascular plant diversity more profoundly than fire in the sagebrush steppe of southeastern Idaho, U.S.A
Cited by: 14
Author(s): Matt Lavin, Tyler J. Brummer, Ryan Lane. Quire, Bruce D. Maxwell, Lisa J. Rew
Software Mentions: 5
Published: about 13 years ago

10.1371/journal.pone.0188430

Diversification rates, host plant shifts and an updated molecular phylogeny of Andean Eois moths (Lepidoptera: Geometridae)
Cited by: 14
Author(s): Patrick Strutzenberger, Gunnar Brehm, Brigitte Gottsberger, Florian Bodner, Carlo L. Seifert, Konrad Fiedler
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0088805

Molecular Phylogenetics and Temporal Diversification in the Genus Aeromonas Based on the Sequences of Five Housekeeping Genes
Cited by: 13
Author(s): J. Gaspar Lorén, Maribel Farfán, M. Carmen Fusté
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0164532

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy
Cited by: 23
Author(s): Jolly Chatterjee, Jacqueline Dionora, Abigail Elmido-Mabilangan, Samart Wanchana, Vivek Thakur, Anindya Bandyopadhyay, D. S. Brar, W. Paul Quick
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0250385

What proportion of people have a follow-up biopsy in randomized trials of treatments for non-alcoholic steatohepatitis?: A systematic review and meta-analysis
Cited by: 1
Author(s): Dimitrios A. Koutoukidis, Elizabeth Morris, John A. Henry, Yusra Shammoon, Matthew C. Zimmerman, Moscho Michalopoulou, Susan A. Jebb, Paul Aveyard
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0249831

Association between early viral LRTI and subsequent wheezing development, a meta-analysis and sensitivity analyses for studies comparable for confounding factors
Cited by: 4
Author(s): Sébastien Kenmoe, Arnol Bowo‐Ngandji, Cyprien Kengne‐Nde, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Gadji Mahamat, Cynthia Paola Demeni Emoh, Richard Njouom
Software Mentions: 5
Published: over 5 years ago

10.3390/foods9080984

Near-Infrared Spectroscopy as a Beef Quality Tool to Predict Consumer Acceptance
Cited by: 8
Author(s): Wilson Andrés Barragán Hernández, Liliana Mahecha-Ledesma, Joaquín Angulo-Arizala, Martha Olivera-Ángel
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0227079

The home field advantage of modern plant breeding
Cited by: 15
Author(s): Patrick M. Ewing, Bryan C. Runck, Thomas J. Y. Kono, Michael B. Kantar
Software Mentions: 5
Published: over 6 years ago

10.1007/s41109-020-00257-3

Evolving network representation learning based on random walks
Cited by: 8
Author(s): Farzaneh Heidari, Manos Papagelis
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pgen.1009010

Candidate variants in TUB are associated with familial tremor
Cited by: 2
Author(s): M. Reza Sailani, Fereshteh Jahanbani, Charles W. Abbott, Hayan Lee, Amin Zia, Shannon Rego, Juliane Winkelmann, Franziska Hopfner, Tahir Naeem Khan, Nicholas Katsanis, Stefanie H. Müller, Daniela Berg, Katherine M. Lyman, Christian Mychajliw, G. Deuschl, Jonathan A. Bernstein, Gregor Kuhlenbäumer, M Snyder
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.5789

Comparative analysis of microbiota along the length of the gastrointestinal tract of two tree squirrel species ( <i>Sciurus aberti</i> and <i>S. niger</i> ) living in sympatry
Cited by: 5
Author(s): Andrew Joseph Reed, Jon C. Pigage, Helen K. Pigage, Cody Glickman, Jeremy M. Bono
Software Mentions: 5
Published: over 6 years ago

10.1186/1758-2946-4-38

chemf: A purely functional chemistry toolkit
Cited by: 6
Author(s): Stefan Höck, Rainer Riedl
Software Mentions: 5
Published: over 13 years ago

10.3390/cancers11010041

Epilepsy Associates with Decreased HIF-1α/STAT5b Signaling in Glioblastoma
Cited by: 11
Author(s): Sharon Berendsen, Wim G.M. Spliet, Marjolein Geurts, Wim Van Hecke, Tatjana Seute, Tom J. Snijders, Vincent Bours, Erica H. Bell, Arnab Chakravarti, Pierre A. Robe
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0224882

Trait self-control does not predict attentional control: Evidence from a novel attention capture paradigm
Cited by: 2
Author(s): Michael Dieciuc, Heather M. Maranges, Walter R. Boot
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-33681-8

Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids
Cited by: 17
Author(s): William E. Fondrie, Tao Liang, Benjamin L. Oyler, Lisa M. Leung, Robert K. Ernst, Dudley K. Strickland, David R. Goodlett
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0194749

Impact of comorbidities on the prognoses of trauma patients: Analysis of a hospital-based trauma registry database
Cited by: 25
Author(s): Chih‐Yuan Wang, Yi-Chan Chen, Ti-Hsuan Chien, Hao‐Yu Chang, Yu-Hsien Chen, Chih-Ying Chien, Ting Huang
Software Mentions: 5
Published: over 8 years ago

10.1016/j.celrep.2020.107691

Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells
Cited by: 17
Author(s): Monica Nafria, Peter Keane, Elizabeth Ng, Edouard G. Stanley, Andrew G. Elefanty, Constanze Bonifer
Software Mentions: 5
Published: about 6 years ago

10.1186/1751-0473-4-5

Motmot, an open-source toolkit for realtime video acquisition and analysis
Cited by: 66
Author(s): Andrew Straw, Michael H. Dickinson
Software Mentions: 5
Published: almost 17 years ago

10.1186/s13321-016-0115-9

MetFrag relaunched: incorporating strategies beyond in silico fragmentation
Cited by: 597
Author(s): Christoph Ruttkies, Emma L. Schymanski, Sebastian I. Wolf, Juliane Hollender, Steffen Neumann
Software Mentions: 5
Published: over 10 years ago

10.1186/1471-2105-9-390

R/parallel – speeding up bioinformatics analysis with R
Cited by: 27
Author(s): Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
Software Mentions: 5
Published: almost 18 years ago

10.1111/imb.12513

Integrative transcriptomic and genomic analysis of odorant binding proteins and chemosensory proteins in aphids
Cited by: 45
Author(s): Q. Wang, Jing‐Jiang Zhou, J.-T. Liu, Huang Guixiu, Weina Xu, Qiaoqin Zhang, J.-L. Chen, Fengquan Liu, X.-C. Li, Siyi Gu
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-32377-3

A Convenient Non-harm Cervical Spondylosis Intelligent Identity method based on Machine Learning
Cited by: 2
Author(s): Nana Wang, Xi Huang, Yi Rao, Jing Xiao, Junqing Lu, Nian Wang, Cui Li
Software Mentions: 5
Published: over 7 years ago

10.3389/frma.2021.644614

PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-15-144

MOIRAI: a compact workflow system for CAGE analysis
Cited by: 62
Author(s): Akira Hasegawa, Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, Timo Lassmann
Software Mentions: 5
Published: about 12 years ago

10.1111/pbi.13483

The genome of <i>Cleistogenes songorica</i> provides a blueprint for functional dissection of dimorphic flower differentiation and drought adaptability
Cited by: 18
Author(s): Jiyu Zhang, Fan Wu, Yan Qi, Ulrik P. John, Mingshu Cao, Pao Xu, Zhengshe Zhang, Tiantian Ma, Xifang Zong, Jie Li, Ruijuan Liu, Yufei Zhang, Yufeng Zhao, Gisele Kanzana, Yunyun Lv, Nan Zhang, Germán Spangenberg, Yanrong Wang
Software Mentions: 5
Published: over 5 years ago

10.3390/cells9102283

Gut Microbiome Changes in Patients with Active Left-Sided Ulcerative Colitis after Fecal Microbiome Transplantation and Topical 5-aminosalicylic Acid Therapy
Cited by: 34
Author(s): Dagmar Schierová, Jan Březina, Jakub Mrázek, K. Fliegerová, Simona Kvasnová, Lukáš Bajer, Pavel Drastich
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.cell.2021.04.039

Microbial exposure during early human development primes fetal immune cells
Cited by: 124
Author(s): A. N. Mishra, Ghee Chuan Lai, Jing Yao Leong, Thet Tun Aung, Noam Shental, Aviva Rotter-Maskowitz, Edwin Shepherdson, Gurmit Singh Naranjan Singh, Rhea Pai, Adhika Shanti, Richard L. Wong, Andrea Lee, Costerwell Khyriem, Charles Antoine Dutertre, Svetoslav Chakarov, Kandhadayar G. Srinivasan, Nurhidaya Binte Shadan, Xiao Meng Zhang, Shabnam Khalilnezhad, Fabien Cottier, Alrina Shin Min Tan, Gillian Low, Phyllis Chen, Yiping Fan, Pei Xiang Hor, Avery Khoo May Lee, Mahesh Choolani, David Vermijlen, Ankur Sharma, Garold Fuks, Ravid Straussman, Norman Pavelka, Benoît Malleret, Naomi McGovern, Salvatore Albani, Jerry Kok Yen Chan, Florent Ginhoux
Software Mentions: 5
Published: about 5 years ago

10.3897/zookeys.542.5975

Taxonomic revision of Afrotropical Laccophilus Leach, 1815 (Coleoptera, Dytiscidae)
Cited by: 10
Author(s): Olof Biström, Anders N. Nilsson, Johannes Bergsten
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0244339

The effects of the sex chromosomes on the inheritance of species-specific traits of the copulatory organ shape in Drosophila virilis and Drosophila lummei
Cited by: 1
Author(s): А. М. Куликов, S. Yu. Sorokina, А. И. Мельников, Н. Г. Горностаев, Dmitriy G. Seleznev, O. E. Lazebny
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0257445

TRIM59: A potential diagnostic and prognostic biomarker in human tumors
Cited by: 2
Author(s): Zheng Jin, Liping Liu, Youran Yu, Dong Li, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 5
Published: almost 5 years ago

10.1128/mBio.02199-17

Nutrient-Dependent Impact of Microbes on <i>Drosophila suzukii</i> Development
Cited by: 103
Author(s): Xiao‐Li Bing, Joseph Gerlach, Gregory M. Loeb, Nicolas Buchon
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0164178

Current and Future Distribution of the Tropical Tree Cedrela odorata L. in Mexico under Climate Change Scenarios Using MaxLike
Cited by: 17
Author(s): Israel Estrada‐Contreras, Miguel Equihua, Javier Laborde, Enrique Martínez‐Meyer, Lázaro Rafael Sánchez-Velásquez
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0216588

Meta-analyses of positive psychology interventions: The effects are much smaller than previously reported
Cited by: 96
Author(s): Carmela A. White, Bob Uttl, Mark D. Holder
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0253656

Relative age effect? No “flipping” way! Apparatus dependent inverse relative age effects in elite, women’s artistic gymnastics
Cited by: 4
Author(s): Eleanor Langham-Walsh, Vicky Gottwald, James Hardy
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-017-14768-0

Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle
Cited by: 17
Author(s): Yang Liu, Lingyang Xu, Bo Zhu, Hong Niu, Wengang Zhang, Jianyin Miao, Xiaowen Shi, Ming Zhang, Yan Chen, Lupei Zhang, Xue Gao, Huijiang Gao, Li Li, George E. Liu, Junya Li
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-25015-5

Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification
Cited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0220528

Effects of multiple stressors associated with agriculture on stream macroinvertebrate communities in a tropical catchment
Cited by: 28
Author(s): Aydeé Cornejo, Alan M. Tonin, Brenda Checa, Ana Raquel Tuñón, Diana Pérez, Enilda Coronado, Stefani González, Tomás Ríos, Pablo A. Macchi, Francisco Correa‐Araneda, Luz Boyero
Software Mentions: 5
Published: almost 7 years ago

10.3390/jcm9082341

Targeted Urine Metabolomics for Monitoring Renal Allograft Injury and Immunosuppression in Pediatric Patients
Cited by: 12
Author(s): Tara K. Sigdel, Andrew Schroeder, Joshua Yang, Reuben D. Sarwal, Juliane Liberto, Minnie M. Sarwal
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13059-019-1840-y

Genetic regulation of gene expression and splicing during a 10-year period of human aging
Cited by: 38
Author(s): Brunilda Balliu, Matthew G. Durrant, Olivia de Goede, Nathan S. Abell, Li X, Boxiang Liu, Michael J. Gloudemans, Naomi L. Cook, Kevin S. Smith, David A. Knowles, Mauro Pala, Francesco Cucca, David Schlessinger, Siddhartha Jaiswal, Chiara Sabatti, Lars Lind, Erik Ingelsson, Stephen B. Montgomery
Software Mentions: 5
Published: over 6 years ago

10.1186/2197-425X-2-10

Reliability of the nitrogen washin-washout technique to assess end-expiratory lung volume at variable PEEP and tidal volumes
Cited by: 10
Author(s): Jean-Christophe Richard, Céline Pouzot, Alfredo Pinzón, J. S. Torres González, Maciej Orkisz, B. Neyran, Marcela Hernández Hoyos, F. Lávenne, Claude Guérin
Software Mentions: 5
Published: over 12 years ago

10.7554/eLife.36521

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly
Cited by: 129
Author(s): Inés Martínez, María X. Maldonado-Gómez, João Carlos Gomes-Neto, Hatem Kittana, Hua Ding, Robert Schmaltz, Payal Joglekar, Roberto Jiménez Cardona, Nathan L. Marsteller, Steven W. Kembel, Andrew K. Benson, Daniel A. Peterson, Amanda E. Ramer‐Tait, Jens Walter
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41421-020-00236-z

Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss
Cited by: 74
Author(s): Chuang Guo, Pengfei Cai, Lina Jin, Qing Sha, Qiaoni Yu, Wen Zhang, Chen Jiang, Qian Liu, Dandan Zong, Kun Li, Jingwen Fang, Fangting Lu, Yanshi Wang, Daojing Li, Jun Lin, Lü Li, Zhutian Zeng, Xianhong Tong, Haiming Wei, Kun Qu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0250831

Environmentally triggered shifts in steelhead migration behavior and consequences for survival in the mid-Columbia River
Cited by: 5
Author(s): Jared E. Siegel, Lisa G. Crozier, Lauren E. Wiesebron, Daniel L. Widener
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2013.00291

FunGene: the functional gene pipeline and repository
Cited by: 451
Author(s): Jordan A. Fish, Benli Chai, Qiong Wang, Yanni Sun, C. Titus Brown, James M. Tiedje, James R. Cole
Software Mentions: 5
Published: over 13 years ago

10.1038/s41598-018-35682-z

MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machine
Cited by: 39
Author(s): Chen Wang, Chun Liang
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2021.641385

Prognostic Value of an Immunohistochemical Signature in Patients With Bladder Cancer Undergoing Radical Cystectomy
Cited by: 1
Author(s): Jie Wu, Junmiao Wen, Yu-Chen Wang, Wenjie Luo, Qifeng Wang, Hong Liu, Bo Dai, Dingwei Ye, Hengchuan Su, Yiping Zhu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1006017

Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
Cited by: 42
Author(s): Kévin Lebrigand, Le He, Nishant Thakur, Marie-Jeanne Arguel, Jolanta Polanowska, Bernard Henrissat, Éric Record, Ghislaine Magdelenat, Valérie Barbe, Sylvain Raffaele, Pascal Barbry, Jonathan J. Ewbank
Software Mentions: 5
Published: about 10 years ago

10.1111/j.1420-9101.2010.02223.x

Similar evolutionary potentials in an obligate ant parasite and its two host species
Cited by: 30
Author(s): Pleuni S. Pennings, Alexandra Achenbach, Susanne Foitzik
Software Mentions: 5
Published: over 15 years ago

10.7554/eLife.20375

Oral transfer of chemical cues, growth proteins and hormones in social insects
Cited by: 96
Author(s): Adria C LeBoeuf, Patrice Waridel, Colin S. Brent, André Nicolau Aquime Gonçalves, Laure Menin, Daniel Ortiz, Oksana Riba‐Grognuz, Atsuo Koto, Zamira Guerra Soares, Eyal Privman, Eric A. Miska, Richard Benton, Laurent Keller
Software Mentions: 5
Published: over 9 years ago

10.1107/S2059798318006551

Real-space refinement in<i>PHENIX</i>for cryo-EM and crystallography
Cited by: 1,815
Author(s): Pavel V. Afonine, Billy K. Poon, Randy J. Read, Oleg Sobolev, Thomas C. Terwilliger, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 5
Published: about 8 years ago