Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.1140

https://doi.org/10.7717/peerj.1140

Cited by: 190
Author(s): Eduardo Castro-Nallar, Matthew L. Bendall, Marcos Pérez‐Losada, Sarven Sabuncyan, Emily G. Severance, Faith Dickerson, Jennifer R. Schroeder, Robert H. Yolken, Keith A. Crandall
Published: over 8 years ago

Software Mentions 11

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: CHNOSZ

Thermodynamic Calculations and Diagrams for Geochemistry
Papers that mentioned: 13

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: gtools

Various R Programming Tools
Papers that mentioned: 60

cran: plyr

Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468

cran: reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421

cran: xlsx

Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Papers that mentioned: 95

pypi: plyr

UNKNOWN
Papers that mentioned: 468

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190

pypi: xlsx

XLSX Parsing (from js-xlsx)
Papers that mentioned: 95