Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.69975

https://doi.org/10.7554/eLife.69975

Cited by: 8
Author(s): Xia Liu, Jingjing Yu, Longyong Xu, Katharine Umphred-Wilson, Fanglue Peng, Yao Ding, Brendan M Barton, Xiangdong Lv, Michael Y Zhao, Shengyi Sun, Yuning Hong, Ling Qi, Stanley Adoro, Xi Chen
Published: almost 3 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: QuantStudio
Quant Studio
Papers that mentioned: 1,164