Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.60176

https://doi.org/10.7554/eLife.60176

Cited by: 21
Author(s): Taro Maeda, Shunichi Takahashi, Takao Yoshida, Shigeru Shimamura, Yoshihiro Takaki, Yukiko Nagai, Atsushi Toyoda, Yutaka Suzuki, Asuka Arimoto, Hisaki Ishii, Nori Satoh, Tomoaki Nishiyama, Mitsuyasu Hasebe, Tadashi Maruyama, Jun Minagawa, Junichi Obokata, Shuji Shigenobu
Published: about 3 years ago

Software Mentions 7

bioconductor: CAFE
Chromosmal Aberrations Finder in Expression data
Papers that mentioned: 251
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: pipeline
Easy shell-like pipelines, with input from a file-like object
Papers that mentioned: 175
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017