Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.58178

https://doi.org/10.7554/eLife.58178

16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development

Cited by: 24
Author(s): Julien G. Roth, Kristin Muench, Aditya Asokan, Victoria M Mallett, Hongwei Gai, Yogendra Verma, Stephen G. Weber, Carol Charlton, Jonas L. Fowler, Kyle M. Loh, Ricardo E. Dolmetsch, Theo Palmer
Published: almost 4 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: anova
uniform access to multiple ANOVA functions
Papers that mentioned: 95
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136