Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.53350

https://doi.org/10.7554/eLife.53350

The natverse, a versatile toolbox for combining and analysing neuroanatomical data

Cited by: 128
Author(s): Alexander Shakeel Bates, James D. Manton, Sridhar R. Jagannathan, Marta Costa, Philipp Schlegel, Torsten Rohlfing, Gregory Jefferis
Published: over 4 years ago

Software Mentions 17

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: Julia
Fractal Image Data Generator
Papers that mentioned: 304
cran: Morpho
Calculations and Visualisations Related to Geometric Morphometrics
Papers that mentioned: 118
cran: nabor
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions
Papers that mentioned: 2
cran: nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data
Papers that mentioned: 2
cran: natmanager
Install the 'Natverse' Packages from Scratch
Papers that mentioned: 1
cran: nat.nblast
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
Papers that mentioned: 3
cran: nat.templatebrains
NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
Papers that mentioned: 1
cran: plot3D
Plotting Multi-Dimensional Data
Papers that mentioned: 47
cran: Rvcg
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Papers that mentioned: 10
pypi: fafbseg
Tools to work with auto-segmented FAFB data
Papers that mentioned: 1
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: jupyter
Jupyter metapackage. Install all the Jupyter components in one go.
Papers that mentioned: 39
pypi: nat
Module to use the annotations created with NeuroCurator.
Papers that mentioned: 2
pypi: plot3d
Plot3D python utilities for reading and writing and also finding connectivity between blocks
Papers that mentioned: 7
pypi: trees
Collection of various tree-like data structures
Papers that mentioned: 5