Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.51339

https://doi.org/10.7554/eLife.51339

Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature

Cited by: 17
Author(s): Chao Yang, Jason R. Siebert, Robert T. Burns, Yongwei Zheng, Ao Mei, Benedetta Bonacci, Demin Wang, Raúl Urrutia, Matthew J. Riese, Sridhar Rao, Karen-Sue Carlson, Monica S. Thakar, Subramaniam Malarkannan
Published: over 4 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: ranger
A Fast Implementation of Random Forests
Papers that mentioned: 91
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: ranger
A Python package for the manipulation of Range objects
Papers that mentioned: 91