Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.47809

https://doi.org/10.7554/eLife.47809

Cited by: 11
Author(s): Harleen Saini, Alicia A. Bicknell, Sean R. Eddy, Melissa J. Moore
Published: over 4 years ago

Software Mentions 7

bioconductor: cleanUpdTSeq
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data
Papers that mentioned: 2
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: circ
A basic CLI to make mosaic vrts using ctx imagery
Papers that mentioned: 69
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017