Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.37090

https://doi.org/10.7554/eLife.37090

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

Cited by: 58
Author(s): Kevin D’hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Verónica Lloréns‐Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes
Published: about 6 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: mash
Python lib for converting dict to objects recursive
Papers that mentioned: 28
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045