Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.33105

https://doi.org/10.7554/eLife.33105

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

Cited by: 152
Author(s): Adam J. Reid, Arthur M. Talman, Hayley M. Bennett, Ana Gomes, Mandy Sanders, Christopher J. R. Illingworth, Oliver Billker, Matthew Berriman, Mara Lawniczak
Published: over 6 years ago

Software Mentions 9

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Papers that mentioned: 21
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: scLVM
scLVM
Papers that mentioned: 19