Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.29132

https://doi.org/10.7554/eLife.29132

Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium

Cited by: 122
Author(s): David R. Hill, Sha Huang, Melinda S. Nagy, Veda K. Yadagiri, Courtney Fields, Dishari Mukherjee, Brooke Bons, Priya H. Dedhia, Alana M. Chin, Yu Hwai Tsai, Shrikar Thodla, Thomas M. Schmidt, Seth T. Walk, Vincent B. Young, Jason R. Spence
Published: about 7 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
cran: ggstance
Horizontal 'ggplot2' Components
Papers that mentioned: 4
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307