Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/plants9121700

https://doi.org/10.3390/plants9121700

Transcriptome Analysis of Alternative Splicing Events Induced by Arbuscular Mycorrhizal Fungi (Rhizophagus irregularis) in Pea (Pisum sativum L.) Roots

Cited by: 8
Author(s): Evgeny A. Zorin, Alexey М. Afonin, Olga A. Kulaeva, Emma S. Gribchenko, O. Y. Shtark, Vladimir A. Zhukov
Published: almost 4 years ago

Software Mentions 7

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: DRIMSeq

Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Papers that mentioned: 17

bioconductor: IsoformSwitchAnalyzeR

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
Papers that mentioned: 16

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: ISA

ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.
Papers that mentioned: 137