Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.3390/nu13082638
https://doi.org/10.3390/nu13082638
Differential Effects of Western and Mediterranean-Type Diets on Gut Microbiota: A Metagenomics and Metabolomics Approach
Cited by: 28
Author(s): Claudia Barber, Marianela Mego, Carlos Sabater, Fernando Vallejo, R. A. Bendezú, Marcela Masihy, Francisco Guarner, Juan Carlos Espı́n, Abelardo Margollés, Fernando Azpiroz
Published: over 3 years ago
Software Mentions 2
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306