Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22168742

https://doi.org/10.3390/ijms22168742

Inhibition of WHSC1 Allows for Reprogramming of the Immune Compartment in Prostate Cancer

Cited by: 5
Author(s): Muzamil Y. Want, Ellen Karasik, Bryan M. Gillard, AJ Robert McGray, Sebastiano Battaglia
Published: over 3 years ago

Software Mentions 8

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: fgsea

Fast Gene Set Enrichment Analysis
Papers that mentioned: 150

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: Rmagic

MAGIC - Markov Affinity-Based Graph Imputation of Cells
Papers that mentioned: 6

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555