Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22168742

https://doi.org/10.3390/ijms22168742

Inhibition of WHSC1 Allows for Reprogramming of the Immune Compartment in Prostate Cancer

Cited by: 5
Author(s): Muzamil Y. Want, Ellen Karasik, Bryan M. Gillard, AJ Robert McGray, Sebastiano Battaglia
Published: about 3 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: Rmagic
MAGIC - Markov Affinity-Based Graph Imputation of Cells
Papers that mentioned: 6
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555