Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22158123

https://doi.org/10.3390/ijms22158123

HERON: A Novel Tool Enables Identification of Long, Weakly Enriched Genomic Domains in ChIP-seq Data

Cited by: 0
Author(s): Anna Macioszek, Bartek Wilczyński
Published: over 3 years ago

Software Mentions 6

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

pypi: hmmlearn

Hidden Markov Models in Python with scikit-learn like API
Papers that mentioned: 13

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203

pypi: pysam

Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130

pypi: SICER2

SICER2, a redesigned and improved ChIP-seq broad peak calling tool
Papers that mentioned: 4