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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.3390/ijms21051720

https://doi.org/10.3390/ijms21051720

Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana

Cited by: 27
Author(s): Stephanie Schaarschmidt, Axel Fischer, Ellen Zuther, Dirk K. Hincha
Published: over 5 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
Very Likely Science (65)
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
Very Likely Science (100)
pypi: salmon
A simple metric collector with alerts.
Papers that mentioned: 36
Very Likely Science (90)