Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/genes12020311

https://doi.org/10.3390/genes12020311

Clustering Single-Cell RNA-Seq Data with Regularized Gaussian Graphical Model

Cited by: 7
Author(s): Zhenqiu Liu
Published: almost 4 years ago

Software Mentions 8

bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
Papers that mentioned: 40
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62
pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell data
Papers that mentioned: 96
pypi: scanpy
Single-Cell Analysis in Python.
Papers that mentioned: 68
pypi: SIMLR
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40