Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/cancers13092163

https://doi.org/10.3390/cancers13092163

Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma

Cited by: 10
Author(s): Ariane L. Moore, Aashil A. Batavia, Jack Kuipers, Jochen Singer, Elodie Burcklen, Peter Schraml, Christian Beisel, Holger Moch, Niko Beerenwinkel
Published: over 3 years ago

Software Mentions 20

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: deepSNV
Detection of subclonal SNVs in deep sequencing data.
Papers that mentioned: 26
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GeneAccord
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Papers that mentioned: 1
cran: caTools
Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Papers that mentioned: 52
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: maxLik
Maximum Likelihood Estimation and Related Tools
Papers that mentioned: 11
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
Papers that mentioned: 30
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690