Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fpls.2018.00108

https://doi.org/10.3389/fpls.2018.00108

Cited by: 61
Author(s): Sophie Lamarre, Pierre Frasse, Mohamed Zouine, Delphine Labourdette, Elise Sainderichin, Guojian Hu, Véronique Le Berre-Anton, Mondher Bouzayen, Élie Maza
Published: over 6 years ago

Software Mentions 8

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: PoissonSeq
Papers that mentioned: 30
cran: QuasiSeq
Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood
Papers that mentioned: 22
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017