Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fphys.2020.624677

https://doi.org/10.3389/fphys.2020.624677

Cited by: 8
Author(s): Rui Fu, Austin E. Gillen, Katharine R. Grabek, Kent Riemondy, L. Elaine Epperson, Carlos D. Bustamante, Jay R. Hesselberth, Sandra L. Martin
Published: over 3 years ago

Software Mentions 9

bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: valr
Genome Interval Arithmetic
Papers that mentioned: 4
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: short
A simple short implementation for Python3
Papers that mentioned: 13