Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fnmol.2017.00045

https://doi.org/10.3389/fnmol.2017.00045

Cited by: 4
Author(s): Sanjeev V. Namjoshi, Kimberly F. Raab‐Graham
Published: about 7 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
bioconductor: SELEX
Functions for analyzing SELEX-seq data
Papers that mentioned: 80
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: Scotty
AWS ECS Container Deployment Tool
Papers that mentioned: 5