Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fncel.2021.648570

https://doi.org/10.3389/fncel.2021.648570

Cited by: 5
Author(s): Rachel A. Keuls, Ronald J. Parchem
Published: about 3 years ago

Software Mentions 9

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: Signac
Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ggplot
ggplot for python
Papers that mentioned: 796