Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmolb.2021.612881

https://doi.org/10.3389/fmolb.2021.612881

Genome-Wide Changes of Regulatory Non-Coding RNAs Reveal Pollen Development Initiated at Ecodormancy in Peach

Cited by: 7
Author(s): Jiali Yu, Dennis Bennett, Christopher Dardick, Tetyana Zhebentyayeva, Albert G. Abbott, Zongrang Liu, Margaret Staton
Published: over 3 years ago

Software Mentions 5

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071

pypi: ViennaRNA

A library for the prediction and comparison of RNA secondary structures.
Papers that mentioned: 200