Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2021.649517

https://doi.org/10.3389/fmicb.2021.649517

Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Cited by: 15
Author(s): Carlus Deneke, Laura Uelze, Holger Brendebach, Simon H. Tausch, Burkhard Malorny
Published: over 3 years ago

Software Mentions 9

cran: Clustering

Techniques for Evaluating Clustering
Papers that mentioned: 65

cran: dendextend

Extending 'dendrogram' Functionality in R
Papers that mentioned: 201

pypi: chewBBACA

A complete suite for gene-by-gene schema creation and strain identification.
Papers that mentioned: 22

pypi: conda

OS-agnostic, system-level binary package manager.
Papers that mentioned: 92

pypi: docker

A Python library for the Docker Engine API.
Papers that mentioned: 39

pypi: hashID

Software to identify the different types of hashes
Papers that mentioned: 1

pypi: HierCC

Hierarchical Clustering of cgMLST profiles
Papers that mentioned: 15

pypi: py

library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403

pypi: scripts

Various shell scripts
Papers that mentioned: 315