Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2021.632333

https://doi.org/10.3389/fimmu.2021.632333

Immunological Feature and Transcriptional Signaling of Ly6C Monocyte Subsets From Transcriptome Analysis in Control and Hyperhomocysteinemic Mice

Cited by: 7
Author(s): Panpan Yang, Lu Liu, Lili Sun, Fang Pu, Nathaniel W. Snyder, Jason Saredy, Yong Ji, Wen Shen, Xuebin Qin, Qinghua Wu, Xiaofeng Yang, Hong Wang
Published: over 3 years ago

Software Mentions 21

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: beepr
Easily Play Notification Sounds on any Platform
Papers that mentioned: 2
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: gt
Easily Create Presentation-Ready Display Tables
Papers that mentioned: 7
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: skimr
Compact and Flexible Summaries of Data
Papers that mentioned: 16
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: gt
A simple tool for managing repositories located accross various git sources (e.g gitlab/github/unix boxes).
Papers that mentioned: 7
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163