Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2018.01286

https://doi.org/10.3389/fimmu.2018.01286

seq-ImmuCC: Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data

Cited by: 61
Author(s): Ziyi Chen, Lijun Quan, Anfei Huang, Qiang Zhao, Yuan Yao, Xuye Yuan, Qin Shen, Jingzhe Shang, Yinyin Ben, F. Xiao-Feng Qin, Aiping Wu
Published: over 6 years ago

Software Mentions 5

bioconductor: DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Papers that mentioned: 23
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: SRAdb
A compilation of metadata from NCBI SRA and tools
Papers that mentioned: 20
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071