Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2021.664654

https://doi.org/10.3389/fgene.2021.664654

Integrative Ranking of Enhancer Networks Facilitates the Discovery of Epigenetic Markers in Cancer

Cited by: 0
Author(s): Qi Wang, Yonghe Wu, Tim Vorberg, Roland Eils, Carl Herrmann
Published: over 3 years ago

Software Mentions 8

bioconductor: ChIPComp
Quantitative comparison of multiple ChIP-seq datasets
Papers that mentioned: 3
bioconductor: chromswitch
An R package to detect chromatin state switches from epigenomic data
Papers that mentioned: 2
bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Papers that mentioned: 39
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets
Papers that mentioned: 42