Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2019.00317

https://doi.org/10.3389/fgene.2019.00317

Cited by: 549
Author(s): Geng Chen, Baitang Ning, Tieliu Shi
Published: about 5 years ago

Software Mentions 13

bioconductor: BASiCS
Bayesian Analysis of Single-Cell Sequencing data
Papers that mentioned: 21
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEsingle
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
Papers that mentioned: 15
bioconductor: M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Papers that mentioned: 21
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: SCnorm
Normalization of single cell RNA-seq data
Papers that mentioned: 15
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
cran: DrImpute
Imputing Dropout Events in Single-Cell RNA-Sequencing Data
Papers that mentioned: 19
cran: SAVER
Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: MNN
C methods for MNN Package
Papers that mentioned: 12