Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2017.00168

https://doi.org/10.3389/fgene.2017.00168

A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics

Cited by: 44
Author(s): John S. House, Fabian A. Grimm, Dereje D. Jima, Yifeng Zhou, Ivan Rusyn, Fred A. Wright
Published: about 7 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: tcpl
ToxCast Data Analysis Pipeline
Papers that mentioned: 3
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071