Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fcell.2021.677697

https://doi.org/10.3389/fcell.2021.677697

Single-Cell RNA-Sequencing Portraying Functional Diversity and Clinical Implications of IFI6 in Ovarian Cancer

Cited by: 7
Author(s): Hongyu Zhao, Zhefeng Li, Yan Gao, Jie Li, Xiaoting Zhao, Wentao Yue
Published: about 3 years ago

Software Mentions 8

bioconductor: AUCell

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45

bioconductor: ConsensusClusterPlus

ConsensusClusterPlus
Papers that mentioned: 313

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: sva

Surrogate Variable Analysis
Papers that mentioned: 511

cran: DDRTree

Learning Principal Graphs with DDRTree
Papers that mentioned: 42

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: CellPhoneDB

Inferring cell-cell communication.
Papers that mentioned: 89

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893