Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.26508/lsa.202000897

https://doi.org/10.26508/lsa.202000897

Tissue-selective alternate promoters guide NLRP6 expression

Cited by: 1
Author(s): Nathan A. Bracey, Jaye M. Platnich, Arthur Lau, Hyunsoo Chung, M. Eric Hyndman, Justin A. MacDonald, Justin Chun, Paul L. Beck, Stephen E. Girardin, Paul M. Gordon, Daniel A. Muruve
Published: almost 4 years ago

Software Mentions 7

bioconductor: apeglm
Approximate posterior estimation for GLM coefficients
Papers that mentioned: 41
bioconductor: CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Papers that mentioned: 27
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ensembldb
Utilities to create and use Ensembl-based annotation databases
Papers that mentioned: 12
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: minimap
Create Tile Grid Maps
Papers that mentioned: 47
pypi: minimap
"Generate minimaps of your code"
Papers that mentioned: 47