Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.18632/oncotarget.25330

https://doi.org/10.18632/oncotarget.25330

Global isoform-specific transcript alterations and deregulated networks in clear cell renal cell carcinoma

Cited by: 14
Author(s): Michael Hamilton, Thomas Girke, Ernest Martinez
Published: over 6 years ago

Software Mentions 5

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: systemPipeR
systemPipeR: workflow management and report generation environment
Papers that mentioned: 27
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: sleuth

Papers that mentioned: 59