Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.17179/excli2015-168

https://doi.org/10.17179/excli2015-168

Data- and knowledge-based modeling of gene regulatory networks: an update.

Cited by: 24
Author(s): Jörg Linde, Sylvie Schulze, Sebastian Henkel, Reinhard Guthke
Published: almost 10 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
cran: ebdbNet
Empirical Bayes Estimation of Dynamic Bayesian Networks
Papers that mentioned: 5
cran: GeneNet
Modeling and Inferring Gene Networks
Papers that mentioned: 87
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136