Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1534/g3.119.400185

https://doi.org/10.1534/g3.119.400185

ARMOR: An <u>A</u>utomated <u>R</u>eproducible <u>MO</u>dular Workflow for Preprocessing and Differential Analysis of <u>R</u>NA-seq Data

Cited by: 35
Author(s): Stephany Orjuela, Ronald Huang, Katharina Hembach, Mark D. Robinson, Charlotte Soneson
Published: over 5 years ago

Software Mentions 8

bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Papers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: iSEE
Interactive SummarizedExperiment Explorer
Papers that mentioned: 13
bioconductor: tximeta
Transcript Quantification Import with Automatic Metadata
Papers that mentioned: 11
pypi: configfile
Dynamically parse and edit configuration files.
Papers that mentioned: 3
pypi: run
Python Process Run Control
Papers that mentioned: 35
pypi: scripts
Various shell scripts
Papers that mentioned: 315
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45