Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.20209833

https://doi.org/10.15252/msb.20209833

Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infection

Cited by: 17
Author(s): Sergio Triana, Megan L. Stanifer, Camila Metz-Zumaran, Mohammed Shahraz, Markus Mukenhirn, Carmon Kee, Clara Serger, Ronald Koschny, Diana Ordoñez-Rueda, Malte Paulsen, Vladimı́r Beneš, Steeve Boulant, Theodore Alexandrov
Published: over 3 years ago

Software Mentions 6

bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668