Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.202010060

https://doi.org/10.15252/msb.202010060

Cited by: 11
Author(s): Liang Fang, Guipeng Li, Zhiyuan Sun, Qionghua Zhu, Huanhuan Cui, Yunfei Li, Jingwen Zhang, Weizheng Liang, Wencheng Wei, Yuhui Hu, Wei Chen
Published: about 3 years ago

Software Mentions 8

bioconductor: chromVAR

Chromatin Variation Across Regions
Papers that mentioned: 46

cran: cellranger

Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79

cran: sctransform

Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: Signac

Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: custom

Custom self carry
Papers that mentioned: 1,363

pypi: pysam

Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130