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Experiments

Papers

Papers: 10.1371/journal.ppat.1009217

https://doi.org/10.1371/journal.ppat.1009217

EBV miRNAs are potent effectors of tumor cell transcriptome remodeling in promoting immune escape

Cited by: 14
Author(s): Nathan Ungerleider, Whitney Bullard, Mehmet Kara, Xia Wang, Claire Roberts, Rolf Renne, Scott A. Tibbetts, Erik K. Flemington
Published: over 5 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: enrichR
Provides an R Interface to 'Enrichr'
Papers that mentioned: 60
Likely Science (58)
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
Very Likely Science (90)
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
Very Likely Science (100)
pypi: SpliceV
Visualize splice junctions, backsplice junctions (circleRNA) and coverage from RNA-Seq datasets
Papers that mentioned: 2
Very Likely Science (100)