Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1008781

https://doi.org/10.1371/journal.ppat.1008781

Gene expression network analyses during infection with virulent and avirulent Trypanosoma cruzi strains unveil a role for fibroblasts in neutrophil recruitment and activation

Cited by: 8
Author(s): Antônio Edson Rocha Oliveira, Milton Pereira, Ashton T. Belew, Ludmila Rodrigues Pinto Ferreira, Larissa M. N. Pereira, Eula G. A. Neves, Maria do Carmo Pereira Nunes, Barbara A. Burleigh, Walderez Ornelas Dutra, Najib M. El-Sayed, Ricardo T. Gazzinelli, Santuza Maria Ribeiro Teixeira
Published: over 4 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: biomart
Python API that consumes the biomart webservice
Papers that mentioned: 46
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071