Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1006668

https://doi.org/10.1371/journal.ppat.1006668

Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis

Cited by: 78
Author(s): Jingwei Cheng, Donglim Esther Park, Christian Berrios, Elizabeth White, Reety Arora, Rosa Yoon, Timothy Branigan, Tengfei Xiao, Thomas Westerling, Alexander Federation, Rhamy Zeid, Benjamin J. Strober, Selene K. Swanson, Laurence Florens, James E. Bradner, Myles Brown, Peter M. Howley, Megha Padi, Michael P. Washburn, James A. DeCaprio
Published: about 7 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: QDNAseq
Quantitative DNA Sequencing for Chromosomal Aberrations
Papers that mentioned: 31
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203