Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0242060

https://doi.org/10.1371/journal.pone.0242060

The difference between cellulolytic ‘culturomes’ and microbiomes inhabiting two contrasting soil types

Cited by: 3
Author(s): Elizaveta V. Evdokimova, Grigory Gladkov, Natalya I. Kuzina, Е. А. Иванова, Anastasiia K. Kimeklis, Aleksei Zverev, Arina Kichko, Tatyana S. Aksenova, А. Г. Пинаев, Evgeny Andronov
Published: about 4 years ago

Software Mentions 14

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: ggforce
Accelerating 'ggplot2'
Papers that mentioned: 24
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
cran: rnaturalearth
World Map Data from Natural Earth
Papers that mentioned: 44
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: Silva
Silva Content Management System
Papers that mentioned: 445