Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0237055

https://doi.org/10.1371/journal.pone.0237055

Genome-wide binding analysis of 195 DNA binding proteins reveals “reservoir” promoters and human specific SVA-repeat family regulation

Cited by: 1
Author(s): Michael J. Smallegan, Soraya I. Shehata, Savannah Spradlin, Alison R. Swearingen, Graycen E. Wheeler, Arpan Das, Giulia A Corbet, Benjamin Nebenfuehr, Daniel Ahrens, Devin Tauber, Shelby R. Lennon, Kevin Choi, Thao Ngoc Huynh, Tom Wieser, Kristen Schneider, Michael S. Bradshaw, Joel Basken, Maria Eliana Lai, Timothy D. Read, Matt Hynes-Grace, Dan Timmons, Jon Demasi, John L. Rinn
Published: over 3 years ago

Software Mentions 3

bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
pypi: nf-core
Helper tools for use with nf-core Nextflow pipelines.
Papers that mentioned: 18
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779