Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0225180

https://doi.org/10.1371/journal.pone.0225180

Analysis of HER2 genomic binding in breast cancer cells identifies a global role in direct gene regulation

Cited by: 10
Author(s): Aisling M. Redmond, Soleilmane Omarjee, Igor Chernukhin, Muriel Le Romancer, Jason S. Carroll
Published: about 5 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Papers that mentioned: 2
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017