Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0222531

https://doi.org/10.1371/journal.pone.0222531

Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach

Cited by: 22
Author(s): René S. Hendriksen, Oksana Lukjancenko, Patrick Munk, Mathis Hjort Hjelmsø, Jennifer R. Verani, Eric Ng’eno, Godfrey Bigogo, Samuel Kiplangat, Traoré Soumana Oumar, Lasse Bergmark, Timo Röder, John Neatherlin, Clayton Onyango, Tine Hald, Susanne Karlsmose, Sünje Johanna Pamp, Barry S. Fields, Joel M. Montgomery, Frank Møller Aarestrup
Published: about 5 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562